RNA id: XM_022670937.1


Basic Information

Item Value
RNA id XM_022670937.1
length 4178
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC103027985
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49627094 ~ 49643347 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

accTCCACCCCCCTCTTGCACCTTTCCGGAGGTTCACCCCTCACTGTCAGTATAAGAGCACTCTCAGACCCTCAGCAGGAACACTCGAGCGGTTATCACACACTCGCCATGTCTCGGCCTATAGCatacctgtgtgtgtgggtgtgtgtgtgcgcggtCATTTCTGACGCAGACGGCCGCAGAGGGACGAGGAAAGGTGAGAAACATAAGAATCGATTTGATCCAGCAGCAGGATACAATACACCTGCCCATCCAGtgaccAGTACTCAGTGCTTGGTGAATGGGATCCTTCTGTTTGAGGGAGCTGCCTGGTCTCCAGATGCCTGCAATGTGTGCCAGTGTAAAGGTGGAGCCGTTAGCTGCCATGCAGTACCCTGCCTAgttacagCTCCACCTGCTAGCAGGCCTGCGGTCAAACAGCAGAAAACACCCAGCGGAGAGAagctggagaaaaaaggcaaagGAAAGAACATACGGCAGCCGAATGGGACGGGGAAAACTGTACTGGAGGTCCATCCCAAAGTGACCATAAGTCAAGCTAAGACTGtgaaggtgcaCTTTCACCTGCTCTCCCCAAGAAGGTGCCAACCCCCAAAGGTGGAAGTAGGTAAACCtcagtggtgggacaggaagcCACCTGTGGTTCAGAGTCCTGATCTGGTGCCAGGGCTGGGAGTGGTGGAGAGGAGGAGATTTGACCACGATGACCATGATGATGACGACCATGTGGAGGACGACAGCGATagtgatgatgacgatgatgacgATGTTGGTGTCTTCCTCAACACCAGTCCAAACAGCCACACAGACAGACTGGCCTCTGCTCACAGGGTGCCATCAACAGACACCATGGCATCAGCTGGCCGAGCAGCACCAGCCCACAGAATGCCATCAACTAGTATACTGGCACCAGCTGGCAGAGAGGCACCAGTCCATAGAGTGCCATCTAATAGCAAACCAGCAGTGGTACCTGCCCAGAAGCCAGCATTACTGCCATCCCAGAGATCCTTTGCCCCTCCCACCAGGCAGTCTGAAGTTCTGCCCCCCAGTAACCCTCTGCCAGTGCCCGGTGGGCGCTCGGTAGCCCCGGGACGTCCTGCTTACCCACAGTACGTACATATGGAGTCCCTGCCCGCAGGCTGCCTGCTGTCCGAGTCCCTGATTGCCTGTGGCAGCACAGGACTCACACACCTGCCACTCCTCAAAGACGCTGGCGTCAGGACACTTTACCTGGcagATAATAAGATCAGTAAGATCCCCAGCAGATCTCTGTCCGGCCTGCCCAATTTGGAGTGGCTGGACCTGAGCAAAAACAAACTGGATGACTCCTCTCTGGGGCTGGACGTGTTCCGGAATCTGACCAAACTGCGGAGGCTgattctggacgggaataatcTGACCAAAGTGCCAGCGCTGCCCCCGTCACTGCTGGAGCTCAAGATTAACGACAACAGGCTGAGCGGACTGACGCCACACAGCTTTagggGTCTGTCACAGCTGCTGACGCTGGAGCTGGAGGATAATCACTTCCACGATGGGAACGTTTCTCCACTGGCCTTCAGAAACCTGGGGAAACTCATCTACCTCAGACTGGACGATAACGACTTCAGAGCCATACCCTCCGGCCTGCCCACCTCCCTGCAGGAGCTGCATCTCTCTGATAACCGTATCGAGGTGGTTCACGCTGGACTCCTCAATAAGACAGTGCACCTGCGGGTTCTAAACCTCAGCCATAACAAGATCCGAGAGGACCGCATCGCGCCCCGAGCCTGGTTCCACCTCCGTAAACTGGAATCTTTGGACCTGTCCTACAATAAGCTGGTGCACGTCCCGTCCTTCCTACCTGTGGGGCTCCGTCAGCTCACTCTTCACCACAACCAGATCGAGCGCATCCCCGGGTACGTGTTCGGACACCTGAAGCCGGGGCTGGACTCCCTCCACCTGTCCTACAACCGCCTGCGTGAGGACGGGGTCAGCGAGGTGTCCTTCCATGGCCTTTACCACTCACTGACTGAACTCCTGCTGGACCACAACCAGCTCAGATCCATCCCCCGCGGCATCATACAGCTCCGAGCCCTGCAGCTCCTCCGCCTAAACCACAACTACATCAGTTCAGTGCCGATGAATTCTCTGTGTGACTCTATGTCTCGCGAGGACTCTCCGCTGCTGTCTGTCCACCTGCAGTACAACCTCATCGACCGCCGCCTCATCCCACACACAGCACTGTCCTGCATCAAAACGTACCACAGCGTCGTCCTGCGGCCACAGAAACACGAACAGATCTATGAgtaacacacactgatacacacacacattgtaacACACACAATGCTTGCCCAAACCCTCTGTGTCTGTCTCAGGTAAACCTCAGAAACCTTTCATATCTCTCAGGGGTGGACTTTACTCTTAACAACACCCAATCTCCTTTTCACACCTACTCTGTTTGATCCGAACCAAAATAGCAAGTGTAAAAAATCCACCGTTCGGACCAAAGAAGGTGGTCTTAGTCCAGATCAACTAAAGTCTGgcctggttagttttggtttcacactgcagtttagttaCTAATCTCTCTAAACAACTTTACAACACCCTGTGATCGTCACTTTAATTGGCAAAATCTCCCTATACTTGattgacgctgattggtttgtagaaaaGCATGCGTCAAGCATTGGCACATTGTTAGCAAGTTGCCTTTTCAaatgttgtgccaaattctgcgtCCATGCCAGGATCTGACTCCTTTCGAGTGCAGGCTTAATTAGTCTGAAAATCTGAATTATCCAAAATAGTATTTTCACAGGGCCAGAAAACATCTCTTTTatttggaccaaattttgggTTTGGACCGTGGTTTATGacacctttcacacctgctattatGGTTTGGACCAATCTGAACAGTCTGAAActgtgaaaacattttttagatgaTTCAGACTTACAGGAAGttaaggctacattcacatgaccaggctaaagtgactgTTTGTTTCTCAGtgtgatcagattttttcatggctgtgtgagtgtgccaaatccgatttttttcaaatcatatttaagtcactttcatgtggtcctaaattggaTTTGTATCCAGTTTCTGGACATGCAACATGGGAATTCACACATCTTTTTTGCTTTTCCGtatgcgctacgtgcttctctctcgtgcccacacatctcttggtgcagctgtgcagctatagctgtaaaaacagcaaaagcaaaccacctggccttttttcacctcctcgacctgagcatgtactttagaccagctgtttgctctccACTCGAGCAGAAAATGCAACTAACCGAATTGTCAACACATAAACATCCGACACGTGTCTTTTAACAAAAcaatcagtgtgaagtatagGGAGACTCTGCCTACATAGGTGATGATGATAGAATAGATCTGGTCTGGATTTCAGTTGTCAATTAGACCTACATAATGTCCAAAATTATACGTATTATTAACACCTTTTTCTCTAGAATATTTTCTGAATACAAGGGTATGAATAAAGAGTGTGCCCTCTTTACTGCAgtaacagcatctactcttctGAATAAGCTTTATATCATAAGTTGGAACATTACTGTGAGGAaggtttgattgcattcagccctGAGAGTGAAAGTGTTTCAGTGACATCAGGTTTTAATGTTTGATGATTATTCCTGCCACAGTCAATTTATTTGCCTGAGATTGGTGCTATGTGTGTATTCACTGCTCCTGCAATACGCAGTTCTAACAGTAAGCCATATGTACATGTCATGTGTATTTACTACTTCTAAATATTGCcgttgtttgtttatattgctttaCTCATTGCACTTACACTGATGATCCTGTTTGACTATCATTGAgtgttatattgtttttttttgtttttttttgttttttttttcaaaaacaagACTTTCATAAAATGGTATACTGTATTGTTATGAACTGtataatttactgtatgtttttacatACACGTGTGAGATTTGGTCCTCATGTTTTAGACATGAAGCTGTATTTGAGCCTATAAGAAAGAACACACCAGAACACATTCTGTTGCTTCTGTTGCTCCATAACTGCACTGAGGCATTTTCTTATTAAAGCTTTCATACAGcagtattttattctgtttataaataaagttgaatACAGGACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80791 lncRNA upstream 80113 49544649 ~ 49546981 (+) True G59960
TU80829 lncRNA upstream 123371 49503517 ~ 49503723 (+) True G59996
TU80819 lncRNA upstream 147737 49479085 ~ 49479357 (+) True G59986
TU80809 lncRNA upstream 166588 49459449 ~ 49460506 (+) True G59976
TU80804 lncRNA upstream 171991 49454429 ~ 49455103 (+) True G59972
TU80860 lncRNA downstream 37295 49680642 ~ 49683666 (+) True G60013
TU80864 lncRNA downstream 111936 49755283 ~ 49755595 (+) True G60017
TU80880 lncRNA downstream 224271 49867618 ~ 49918681 (+) False LOC103025235
TU80883 lncRNA downstream 273304 49916651 ~ 49990417 (+) False LOC103025235
TU80898 lncRNA downstream 296169 49939516 ~ 49988936 (+) False G60034
XM_007236974.2 mRNA upstream 13614 49608599 ~ 49613480 (+) True LOC103028705
XM_007236976.3 mRNA upstream 20196 49602791 ~ 49606898 (+) True ndufb11
XM_022670834.1 mRNA upstream 26288 49570712 ~ 49600806 (+) True LOC103028292
XM_007236977.3 mRNA upstream 58259 49548644 ~ 49568835 (+) True sin3b
XM_022670936.1 mRNA upstream 87353 49470432 ~ 49539741 (+) True LOC103028608
XM_007236973.3 mRNA downstream 6212 49649559 ~ 49661539 (+) True LOC103028393
XM_022670835.1 mRNA downstream 19459 49662806 ~ 49666402 (+) True LOC103028085
XM_007236972.2 mRNA downstream 20158 49663505 ~ 49666402 (+) False LOC103028085
XM_007236951.3 mRNA downstream 25382 49668729 ~ 49676609 (+) True dedd
XM_007236955.3 mRNA downstream 49715 49693062 ~ 49747956 (+) True LOC103022925
TU80792 other upstream 189481 49423516 ~ 49437613 (+) True G59961
TU80616 other upstream 628623 48998160 ~ 48998471 (+) True G59806
TU80591 other upstream 747471 48870167 ~ 48879623 (+) True G59782
TU79888 other upstream 2745203 46852364 ~ 46881891 (+) True G59257
TU79487 other upstream 3836940 45789711 ~ 45790154 (+) True G58971
XR_002650102.1 other downstream 996147 50639494 ~ 50652274 (+) False LOC103045694
TU81516 other downstream 1632853 51276200 ~ 51286140 (+) True G60481
TU81517 other downstream 1638643 51281990 ~ 51286140 (+) False G60481
TU81531 other downstream 1759987 51403334 ~ 51409013 (+) False hdac6
TU81766 other downstream 2121744 51765091 ~ 51765620 (+) False otud5

Expression Profile