RNA id: XM_022670945.1


Basic Information

Item Value
RNA id XM_022670945.1
length 1622
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC103027674
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1772919 ~ 1786362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGGTACTTTACTGCACTTATTTAGACTGGAAAATCCAAGCTAAGCTCATTTTTCAGGATCATTTTATCCTTTTGGGTGATTTTTGTTAAAGCGGGAACATTtatacagcttttttttctgtaaatgggGAGGTGTCGATCAGTGAAGATGGGTCGTGTTCTGATTCTGATGCTGTGCATGTTCATGTGGATGCCACTCTATGCTGCATTACACAAAAAGGACCTGAAGGAAGCTACAGTCTATTTAACGAAATATGGATATCTTCCTACATCACTTCATCATCCCAAGGACCAGGATGGCCAGGTGAAGCAAATATCTGAGGCTCTCAGggtttttcagAAGGTGATGGAGTTGCCGGTGTCCGGCAGACTGGATAATGCCACACTGGTCATGATGAAACAGCCCCGCTGTGGCCTGAAAGACCCCTTCAACAACAGGACCCTCAAATACCGCGTTCTGGGTCACTGGAGGAAGAAGACTCTGAGCTACAGGATCTATAACCACGCCTCCAGTCTGGGCGTGGCTAAAACCCGAGCCGCCATTCAGACAGCGTTCAGGTACTGGAGCGAGGTCTCGCCCCTCCGCTTCCACGAGCTCAACAAGGGACATCCCGACATCAAAATCTCCTTCCACGGGCGGGACAGGGTCTGCCCCGTACCCTTCGATGGACCAGGTGAGGTTCTGGCCCACGCTGACAGTCCAGAGTCTGGGTTAGTGCACTTTGATGAAGAAGAGCTGTGGACGGAGGGGAAGAGCACGGGGTCTAATCTACGAATAGTAGCAGCCCACGAGATTGGCCACGCCCTGGGTTTAGGCCACTCCCAGTATCGCAGTGCTCTAATGGGCCCAGTGTACACTGGGTACCGCAACAACTTCAGACTTCACCCTGATGACGTGCGCGGTATCCAGGCGCTGTACGGTAAGCCTGTGGAAAAGCCACCACCCGCCCCGGCAGTGCCGAATAAGCCACCAGCCGACTCAGCTGCCCCGGATCCCTGCACTGCCTCACTGGATGCCATAATGCTGGggCCTCTTCACAAGACGTTTGCGTTCAGTGGAGATTATGTTTGGACAATATCAGATGCTGGCTATAACACACCCATACGGATTAACGTCCTGTGGAAAGATCTACCAGGACACATAAACGCTGCGGTGCATTCTCCCAGAACCAGCAAATCCTACTTCCTTAAAGGTGAAAAGGTGTGGAGGTATTCTGGGTTTAAGTTGGATCACAGCTATCCCAAAGTGCTCCTCATCCCTCCTAACATCGACTCCGCCTTTTACTCCAACGCCAACAAAAAACTCATATTCATCAAGGGTTCAGAGTACTGGCAGTGGGATGAACTGGGCTCCAGTAATGAACTCAGGCAGTATCCTAAATCTCTGAAAGAGCTCGTTACGGGATTACCATCCAATCCGGATGCAGCGTTCACCTGGACTAACGGCCACACCTACCTGTTTAAAGGTGATCAGTACTGGCGTATTAACCCCCGAGGCTTCATAGAGAAGGGATACCCACTCAGCAAGCAAGATCGCTGGATGCAGTGCAGCGATTAACCCCCTATatactgtacagctctggaaaaaaaaggagagcacttaaaaatgagtttctttgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65971 lncRNA upstream 45637 1639979 ~ 1727282 (+) True G48822
TU65964 lncRNA upstream 161687 1606475 ~ 1611232 (+) True G48815
TU65962 lncRNA upstream 162623 1606475 ~ 1610296 (+) False G48815
TU65906 lncRNA upstream 266633 1491321 ~ 1506286 (+) True G48772
TU65894 lncRNA upstream 302754 1463023 ~ 1470165 (+) False G48771
TU66023 lncRNA downstream 17395 1803757 ~ 1904244 (+) True G48857
TU66036 lncRNA downstream 48956 1835318 ~ 1851766 (+) True G48868
TU66057 lncRNA downstream 103545 1889907 ~ 1934861 (+) True G48887
TU66065 lncRNA downstream 107556 1893918 ~ 1895755 (+) True G48891
TU66081 lncRNA downstream 130233 1916595 ~ 1952370 (+) True G48897
XM_015603140.2 mRNA upstream 8844 1760812 ~ 1764075 (+) True pym1
XM_022670987.1 mRNA upstream 311221 1415274 ~ 1461698 (+) True LOC103041629
XM_022670982.1 mRNA upstream 1295623 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 1503397 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 1641281 122069 ~ 131638 (+) True LOC111192720
XM_007231153.2 mRNA downstream 213212 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 573560 2359922 ~ 2362224 (+) True LOC103028158
XM_007231678.3 mRNA downstream 679231 2465593 ~ 2474573 (+) True adipor1
XM_022671014.1 mRNA downstream 692229 2478591 ~ 2506196 (+) True klhl12
XM_015600865.2 mRNA downstream 723782 2510144 ~ 2521419 (+) True LOC103031418
TU65829 other upstream 961654 808155 ~ 811265 (+) True G48714
TU66507 other downstream 1196484 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 1196562 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 1196562 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 2458166 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3832797 5619159 ~ 5627452 (+) True prok1

Expression Profile