RNA id: XM_022670974.1


Basic Information

Item Value
RNA id XM_022670974.1
length 2376
RNA type mRNA
GC content 0.56
exon number 18
gene id LOC103025805
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5633087 ~ 5655686 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACTGAGCCCAACAAGGAACTCACAGTAAAGACAATGAAGCTGATCCTGGCCCTGTGTGCCCTGGTGGCACTTTCAGAATGCTTCAAGGTGCAACTGATCAAGGGCAAGTCTGCTCGTGAGAGGCTGAGGGAGAAAGGACTGTGGGAGAAGTACAGGTTGATGCACCCCTACAACCCCCTCGTCAAGTTCTCTGGGAATGGTGGTACTGAGTCCATGACCAACGATGCTGATCTCTCCTACTACGGCGTGATCTCCATTGGAACCCCTGGTCAGTCCTTCCAGGTCATTTTCGACAGTGGCTCCTCCAACCTCTGGGTGCCCTCCACCTACTGCTCCAGCCAGGCCTGCGagAACCACAACAGGTTCAACCCCTCAGCTTCCAGCACTTTCCAGAGCACCAGCCAGGCTCTCTCTATTCAGTACGGCACCGGCAGCATGACTGGATACCTGGGATACGACACTGTTTCGgTCGGTGGAATCAACGTGCAGAACCAGATCTTCGGGCTGAGCGAGACTGAGGCTCCCTTCATGGCCAACATGGTGGCTGACGGCATCCTGGGTCTGGCCTACCAGTCCATTGCCTCTGATGACGCCACTCCCGTCTTTGACAACATGATGAGCCAGGGCCTGGTCTCCCAGGATGTGTTCTCAGTCTACCTGAGCAGAGGTGGCTCAGAGGGCAGTGTGGTGCAGTTCGGTGAGATCGACAGCTCCTACTACACCGGCAGCATCTACTGGATCCCTCTGTCCTCCGAGACTTACTACCAGATCACCATGGACAGTGTTACCATCAACGGACAGACCGTTGCTTGCTCTGGTGGATGTCAGGCTATCATTGATACTGGAACTTCCCTCATTGTTGGGCCAACCAGTGACATCAACAACATGAACTCCTGGGTGGGCGCCACCACTGACCAGTATGGAGATGCCACTGTGAGCTGCAGCAACGTCGCCAGCATGCCTTCAGTCACCTTCACCCTCAACGGCTACACCTTCACCGTCCCCGCCTCCTCCTACGTCAGCCAGGACTCTTACGGCTGCAGGACAGGCTTCAGTGGCAGCGGAGACTCTCTCTGGATCCTGGGTGATGTGTTCATCAGGAACTACTACACCATCTTCAACAGGCAGAGCAACAGCGTGGGTCTGGCTGCTCTCGCTACATTTCAAGCTCACCTTCAGGGCAGTAGCTCTACTCCCACCACAGCATCTTCAAACTCCTCTTGGGTCTCAGCTAGTCGGCTGAAGCTCCGCCCGGTcgtGGTGCCTCTGATCAAGGCCAAATCTGCACGCCGGAGGCTGCAGGAGAAAGGCCTGTGGGAGACCTACAGGAAGCATCACCCCTACACCCCCTGGACCAAGTTTGTGAGCTCTGGTATGGAGTCAATGACCAACGATGCTGATCTCACCTACTATGGCGTGATCTCCATTGGTACTCCTGGTCAGTCCTTCACCGTGCTCATGGACTCTGGATCCTCCAACCTCTGGGTGCCCTCCACCTACTGCTCCAGCCAGGCCTGCCAGAACCATGACATGTTCAACCCATCACAGTCCAGCACTTTTGAGAGCACCAATGAGTCTCTGTCCATTGCTTACGGCACTGGAAGCATGACCGGATTCCTGGGATACGACACTGTGACGGTCGCTGGACTGTCCGTGCAGAACCAGATCTTCGGCTTGAGCGAGACTGAGGCTCCCTTCATGGCTAGCATGACTCCTGATGGTATCATGGGTCTGGCCTACGAGGCCATCTCCTCTGACAGCGCCACCCCTGTCTTTACCAACATGGTGAGCCAGGGCCTGGTCTCCCAGAACCTCTTCTCAGTCTACCTGAGCAGCGATGACGAGCAGGGCAGCATGCTGTTCCTGGGTGAGGCTGACAGCTCCTACTACACCGGCAGCATCTACTGGATCCCTCTGACCTCTGAGAGCTACTACCAAGTCACCCTGGACAGTGTCACCGTGAACGGAGAGGTGGTTGGCTGCTCTGGTGGTTGCCAGGCTATCATTGATACCGGCACTTCCCTCATTGTTGGACCCAGCACTGCCATCAGCAACCTGAACGCTTACCTGGGAGCTCAGCAAGACCAGTACGGAGATTACGTTGTGAGCTGCAGCGACATCTCCAGCATCCCCTCAGTGACCTTCACCCTCAACGGCTACGCCTTCGCCATCCCCGCCTCCTCCTTCGTCACTCAGGGCTACAGCAGCTGCACAACTGGATTCTCCGGCGGCGACTTCGGAAGCAGCTTCTCCTGGATCCTTGGTGACGTCTTCATCAGGAACTGGTACACCATCTTTAACAAGGGCGACAGCACCGTGGGTCTGGCTCAGCTCTCTTAAGCACAAACAGCAACTTAAACATCAGCCTCACTGC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K06002 PGA; pepsin A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67368 lncRNA upstream 26487 5606003 ~ 5606600 (+) True G49868
XR_002650135.1 lncRNA upstream 94174 5537015 ~ 5538913 (+) True LOC111192752
TU67352 lncRNA upstream 95457 5529806 ~ 5537630 (+) False LOC111192752
TU67354 lncRNA upstream 117228 5515561 ~ 5515859 (+) True G49855
TU67336 lncRNA upstream 190402 5442409 ~ 5442685 (+) True G49838
TU67409 lncRNA downstream 10253 5665939 ~ 5666658 (+) True G49901
TU67435 lncRNA downstream 50013 5705699 ~ 5718260 (+) True G49915
TU67469 lncRNA downstream 163277 5818963 ~ 5819283 (+) True G49941
TU67470 lncRNA downstream 168929 5824615 ~ 5825171 (+) True G49942
TU67513 lncRNA downstream 271719 5927405 ~ 5930023 (+) True G49980
XM_007231938.2 mRNA upstream 5635 5619312 ~ 5627452 (+) False prok1
XM_015601208.2 mRNA upstream 104023 5523809 ~ 5529064 (+) True rbm15
XM_022671050.1 mRNA upstream 119416 5496669 ~ 5513671 (+) True alx3
XM_007232973.3 mRNA upstream 314639 5274656 ~ 5318448 (+) True kcnc4
XM_022671045.1 mRNA upstream 362082 5266678 ~ 5271005 (+) True LOC103043955
XM_022671058.1 mRNA downstream 114330 5770016 ~ 5781687 (+) False LOC111192754
XM_022671057.1 mRNA downstream 114338 5770024 ~ 5781687 (+) False LOC111192754
XM_022671056.1 mRNA downstream 114338 5770024 ~ 5776674 (+) True LOC111192754
XM_022671055.1 mRNA downstream 126091 5781777 ~ 5789265 (+) False LOC103023397
XM_007231928.3 mRNA downstream 235965 5891651 ~ 5912340 (+) True LOC103022582
TU67370 other upstream 5635 5619159 ~ 5627452 (+) True prok1
TU66895 other upstream 1386860 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 2619457 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 2619457 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 2619457 2982924 ~ 3013630 (+) False faf1
TU67445 other downstream 121366 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 715834 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 1328504 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 2551656 8207342 ~ 8221162 (+) True G50568
TU68306 other downstream 2614562 8270248 ~ 8278756 (+) True G50563

Expression Profile