RNA id: XM_022670978.1


Basic Information

Item Value
RNA id XM_022670978.1
length 4140
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC103037743
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7026649 ~ 7039636 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCAGAATTTCTAGTGCAGGATAAGTCTGGTTTAAAGACCAGAGAGGCCTCTTCTGAGGACATAAAGTATCCTGAAGGCAGTGCTGTTGGAAATCagaaacatactgtacatatatggAGCTGCCTGAAAGCATATTTAAACAGCTTGTTCTCTGTATCATTTAATCAGGAGGCGGTGTTTATTGGAAACGGAGAGGAGTACATATGGAAGCCCCCGGAAGATGATGACATCATGTTCCAGCACAAGCACATAGGCCCTCTGAGCCCACATATGGGAGACAGCATGGCTGCTTCTGCAGCTGGGATCTCAGAAATGTACTCTAAAGTGTGTAAACCCAATAAGAAGAAGCGAGGCATGCCCGGCTCCCCCACGGCTCCCAGAGACATCACTGGCTATCGGACCTTGGCTCGCTGTGAACGCGGGGAGCGCGATGGGGGCTTCAATGTGGTGGTCAAGCCACAGACTTGGGCACCGCAGGAGAGCAAAGGCTCACGGGGGCCCCCTGGCTCCATGGAGGACCACTGCTACGAGGCCATCAGCACCGAGGAGAGCGAGTTGGCCTACGACCCCATGGAGGGCGCAGGGGGCTGGAAGAGGGACAGGCCTCCGCCCAACGCCAGCGCCACTCTCCGGCCCAAGAAGAAGAAGCCCCAGCAGCCCTTGCAGCAACCGCCTCCGCCTCCTCCACCCCCCCAGCAGACACCCAAGCTGCAGCACCTGCCTGCCAAAGCCCTGCTGCTGCCCGGGGAGAACCTGTACGAAAGTATTCCCGACCTAAAGCAGGGCTCAgccacctccagcaccaccaccatCTTCACCTTTAACGACGGAATGGAAATGTACGTCACTGGCCTGTAGAGGGAGGAGCTCTGTGATAAAAGTGATATTTACGTCCGAAACTCTTCCCCCTCTCTGAGCCAAATCGGGGAAAGAGATGTGACGTGAAAACTTCGTAGAACATGAGGGAGTTTTGCTCTTCCTCTTGCACTCATTCACACATCCTGTTTACATTTCAGTTCCCAAGTAGCCCCACTCATTGCCTTATGGAAGCAGTCTGGGAAGGGGACTTTTATTATGGAAGATAACAGGCTCGAGTCTGGAAGGGAAAAGCTGTTGTGCTGTACATCGCCTGGTATACACACATTGCACTACCACTGTATATCTAACATGAAGTACCAATATGTATTGTGTATTGGTTGAGTTTTGAAAGCGtgccagaaaaaaataatacgaTAAAATGCCTGGGGCGGAAAAGCACCCAGGAAAAACTCAGTTATTCACTCCGATTCATATCTTTAATAAGTAAAAAGTGACCGATCACTCACCAAATGTTTAACATatcactttaactttaacttattGCACAGATAACTGCATTAGAAGAGGGATTCCCAAATTAAGACACACCCCAGGATCCTGGTTTTTAACAGCACACTCACTTACCCATTTCTTATTCATTTGGGTGACCATCGGAATTGCGGGTCAGACTTTAATTTAACCTCTAGTAATTTCCaaaggagagatggagagagaaaagaaagaaatgagcaCAAAAAAGCAGTTCTACCGGAAAGGTAGAACATACCCACAGAGAAAAATGTGTAGCACGAAAAAATGGGGTTAGATTCACAAAAAGTGTCCTAAGAAGAATTGTTCAAGAAAAGttaatgattaaaatgtaatatatatatatatatttacctttatttccttcttaagatttgtttttaattctaggagcaaataaaaaaaaatcgtatAGTTTTTTCCTGCCTCACAATTGCCATACACTTGAAATAAATCTTTAGTAATTTTGTAAGTGTCCAATTGGTCACTTTCATACTAATTATAGTTGTACGCACAAATTTACCTAATGGAGATAGAAGGCCGATGATGGACTAGATGACTTGTATCATTCAAAGCATtgagaatttgtttttttaattggttttaatgtttcaaGTTCGTGGACCCCAGAtggttaaaaagtaatttattctTTGGTAAATTTGGTGAATGATGACAGTAAACATGAGCATCCTTATTTTAGGAATTTTCATACTTTCTTCTTAGGAAAGCTTTGTGAATCTGGCCTTTGACCCTTATTAAAGCATTAGCAAAAGATAAGCTAGAGTAAATCAAGTCTAacttttaaaagctgtttgacaATGAACAAAGATCTttatctaaattaaaatatatagaaaactCGGTCCTGTTTTGGAATCCAGCTTTATCCAGAagctttagaaaaatgtgttgctATTTTTGTAAAGTAAAGCCTCTATTTCTGTAGAGAAATTATATGGGGAAATAACttaaatagatataaaaactataaattcTCATTCACTGAATCACACAAGTGCAGTATtatatcacttatataaatgattaaaaatgatgcCCTATTTTGTTCACAAGCACAGAATCTTATATACTGCAAGTCTTCTCTTTTAGCACTTAATCCCTTATCAGCCCCTCGTGTGATGGAAAGGTGATTTGAAAACGGTGATGtaatgataaaaaagaaaagtaatgaTATGATAATTACAGTAGCAATTACGGAGAGCATTAGGAGAATTAGAAGAAGCTCAGGGAGAGTGAAAAATCTAATGGTAATTGAATTAGTTGCACACAAGCACTGTTTTTTCCTCTGAAGTGAAACAAAATGATAAGAAGTTATGACGTTTTAGACAGAGGACCCTGGCGTGCTGATGTGCCCATTCAAAATggggttttatttgtttttttcatagtatttcctttttatttaaatgttttatttagtttgagCTCATAACATGAACACTAGACTGGCTTTGTTTGAGTCACCACTGCcataaagtacagtacagtaagtgttttattttgtcaaTACTGTTAATGCACTTTGCCTGACAAAAAGATGCATGCTttcaaaaaaacacaacaaaaaaatgacaaaaaaaaacaacttaacaaaggaaaaaagaagCACTGTTATGTGGTATCTGAGAATGGTTTATTTCTTGCTGTTGTCAGTTGcttatttgatttaaatgccttttcctccattaaaagagagaaagagagagagcacaatgttGTTTTGCTGGGGAATCGGCGAGCCTGCTGTTAGGATGACGGCTCGAGGAGAACTCGACCACATGGACATAAGGGGATAAACGGAAGCAGAATGCTGTGACTGACCACAGTATAGTAAACATATCGTAGACAATCCTCCTCCCTTCTGCCAGTCTGGATGACTGCGATTGGCCCCGCCTATCTTGTAGGTGAACTAAACAACTGTATGTATGGTTAAGGTGGACTTTAAGGTTACCCAGCAGTGCTGCAGCACACCattaaatgataaaagaaaTCTATTGTATTCTGTATAATAATTGGGAACTATTATTgggaattattatttaaacactaTTGAAACAGTGGTATTATGATGGTGGCCTACAGTGATGATTTTTAATGCCCACCTGCTGCTatacagcacaaaaaaaaaaaaaaaacaggccggACAATGTGTTATATTTGATGttctttaaaaagaagaagaaaaaaggttAATCCCTACAAAAAGAATTAAAATTTCCTGTGAAATTGACTGACTAAGCTAGCCTATGTGGCCTGACcctgcagacaaaaaaaaaaaagaaaaggaaaaaccgGAGTCCAGAACAGAATTACTGTCATGTATGTTGGCGCGACATTGTAAATATGttacaaagaaaagaagaaaaaggagtgaACAAAATGAAGTGACCCTATGTGTTCTTGACGGTATATGTTTCTTTTTCCGGTTGTTCTTTttggaatgatttttttttttttaaatgttcccTCTGGTGAAAACTTTGCTCTGTGAGTTTTGAGTTTTGACGTGTTTCGGGGTCTTTTGATTTCCTCTCCCCTGCCATTTCAGCTGTAATGTGTATTTCCCAGATCAACTGAGTATTAGTGTGGCAGCTGATGTCGTGCGTTTGCTTATCAAACAACAGGGTGGTGTGTATTCAAGCCGTGTAAGTACTCATGTGCAAAGattgtaatgtttttataaCAAAAATGACTTCATAAAAATGTCGGGTCAAGTTTATACTTTTGTAATAAAGTAGCACCTAAAAAATGCTTTCACATGCTGGA

Function

GO:

id name namespace
GO:0050852 T cell receptor signaling pathway biological_process
GO:0050853 B cell receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67844 lncRNA upstream 30455 6985536 ~ 6996194 (+) True G50224
TU67830 lncRNA upstream 86805 6889966 ~ 6939844 (+) False LOC103039117
TU67810 lncRNA upstream 234952 6788872 ~ 6791697 (+) True G50197
TU67806 lncRNA upstream 238446 6782888 ~ 6788203 (+) True G50195
TU67798 lncRNA upstream 251065 6774650 ~ 6775584 (+) False G50188
TU67877 lncRNA downstream 27239 7066875 ~ 7072486 (+) True G50253
TU67882 lncRNA downstream 37597 7077233 ~ 7080141 (+) True G50258
TU68103 lncRNA downstream 841250 7880886 ~ 7884058 (+) False c6h9orf3
TU68105 lncRNA downstream 841250 7880886 ~ 7884058 (+) False c6h9orf3
TU68124 lncRNA downstream 899965 7939601 ~ 7942527 (+) True G50439
XM_022670977.1 mRNA upstream 66017 6941690 ~ 6960632 (+) True LOC103035560
XM_007231893.3 mRNA upstream 84671 6863356 ~ 6941978 (+) True LOC103039117
XM_007231894.3 mRNA upstream 226284 6798654 ~ 6800365 (+) True c6h6orf226
XM_007231898.3 mRNA upstream 255588 6748399 ~ 6771061 (+) True LOC103040567
XM_007231900.3 mRNA upstream 424907 6590291 ~ 6601742 (+) True was
XM_007231965.3 mRNA downstream 84212 7123848 ~ 7130581 (+) True LOC103034603
XM_022671072.1 mRNA downstream 202489 7242125 ~ 7333972 (+) False LOC103033640
XM_022671070.1 mRNA downstream 202498 7242134 ~ 7336833 (+) True LOC103033640
XM_022671071.1 mRNA downstream 202498 7242134 ~ 7336833 (+) False LOC103033640
XM_022671069.1 mRNA downstream 311033 7350669 ~ 7485744 (+) True LOC103033322
trnae-cuc other upstream 42388 6984190 ~ 6984261 (+) True trnae-cuc
TU67633 other upstream 649944 6371520 ~ 6376705 (+) True G50063
TU67445 other upstream 1237916 5777052 ~ 5788733 (+) True LOC103023397
TU67370 other upstream 1399197 5619159 ~ 5627452 (+) True prok1
TU66895 other upstream 2780422 4244528 ~ 4246227 (+) True G49475
TU68311 other downstream 1167706 8207342 ~ 8221162 (+) True G50568
TU68306 other downstream 1230612 8270248 ~ 8278756 (+) True G50563
TU68335 other downstream 1303304 8342940 ~ 8344514 (+) True G50583
TU68705 other downstream 2603738 9643374 ~ 9782721 (+) True G50889
XR_002650141.1 other downstream 3084084 10123720 ~ 10130801 (+) False nfu1

Expression Profile