RNA id: XM_022670982.1


Basic Information

Item Value
RNA id XM_022670982.1
length 4144
RNA type mRNA
GC content 0.46
exon number 6
gene id ajap1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 354036 ~ 477296 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcacTGCGCACTCACTGTTCGCGCGCGCttgaagaagaaggagaagaagaaggagaagaagtgGTGGCGCTCTGATCTCGCCGCTTATATGTCGCGCGCCCCTCTCACCTTTGCCTCGCACGCGCCCCACGACCACGACCGCGACTACGAAGACGAGGAAGAGGACGACGACGACCAGCGGGAGGATTAGCATAGAGGAGATAATGTAGAGGGAGCGCGCGCTCGCTCGTGAGTGCGCGGGACGCCTTCATCTCGCGGCTCGTCTCGAGACCATGTTCCTCCCCTCGCTACTCATCTTCGTCTCGAGCGGAGCGCGCGGCGAGGTCTCGTGAACTTTCCGGAGGAAGGAGtgtgttctgtgtttctttttttcagctttttttctcttttatgtttctctttttctctcttttttttttaaatcttttgatCTTTTACAAGCCTGCGTTACCGGCACGCGCACTCCTGATCTTTTGCACGCGTTACCTGGAACGAGGTAACGGTAACTAAAAGaggaaaacaggaaaacaggagggttaaaaaggGGTAACTGTGTGGCTGCGCGCGTGGGTGCGCACGTGGGTACCCGGAGGTCTCGCGGACGCGCGAGCGTGGAATGTTCGCGTCCGGACCGTGTGGAGTACCCGCGCTGAGCTGAAGGGCTGGGAGAGAGGAGCGCGCGAGCGAGCGAGCGTCGACATTTGGGGAGTGCAACGTCGTCAATGGGAGGAGGAGGACTGATCTGGAATCGATATCGATCATTATGTGGATAAAACGGTGTATAGCGCGCAGtTCCATGGCTGCTCTGAAGCCCTCAGGTCTGCTGGGATGCAGAATGTGGATCCTCTTCGCCCTAATCCACCTGACTCTGGACCTGTCGCTGTGTGCTCCGGCGGGTCAAGGCCTGCCACTCAAACTGCTGCCTCGGTCGGCGCCTCGGCTCAGGCCCCGCCCCCTACCCACCAGGGACGCACCTAGCacccagccctggaggactgtGGGCACCTGGCAGCGGGGCGTCCCGCCGCCTCCCGTCCCGTCGCCCGGGTACCGGGGCGGAGCAGGATTAGGGGGGTTGGGGTCCAAACCGCGGGCGCAGAGGCGCAGGCGTCACCTGTGCAAGAGGTGCGGTTCGAAGCCCCGCCCCTCGGAGGGGGAGGAGTCTCTGGAGTTCCTGGAGGGGAGTAAATCCGACATCCTGCGGTACTTGTTGCGTTCACGGCGGCAGCTGGAATGGGACAGCTACGATCAGGAGGGGAGGACCACCACGGTGGCGGGATATATCGAGTGGGGTCCGACGGGGACGGACGAGGGTCTGGAGGACGACGTTAAAGCGGTTCCcaacaccatcaccaccacgaaagcctccaccaccaccaccacaaccacTACTATCTCCACCACCACACGCAGCCCCCAAAGGACTTACGCCGTGGTCACGACTCCACATCCCCAGAGGCTGAGCACCACGCAGCCTACCGTTAACCTCGGGGTCACTGCCAAGCCACAAAAGCCATTCGGGGACACGCCAGGTCTGGCAGTGCATCAGATCATCACTATCACTGTTTCCCTCATCATGGTCATCGCAGCCTTGATAACAACACTAGTCCTTAAAAACTGCTGTGCACAGTCGGGGAATGGCCGCCACACTAGCCACCAGAGGAAGATCAACCAGCAGGAGGAGAGCTGCCAGAACCTGACCGATTTCACGCCGGCACGAGTGCCCAGCAAGGTGGACATCTTCACTGCCTACAACGACAGTTTACAGTGCTCGCACGAGTGTGTGCGCACCGCCGTGCCCGTCTACACCGACGAGATGATCCAGCACACGCCCATTTACAAGACCACGTACAACGGGAACAGACCGTCGCCGACTGAAAGGCAGCTAATCCCCGTGGCCTTTGTGTCTGAGAAATGGTTCGAGATCTCCTGCTGAGGGCCTTTTACTACCTGCGGGTCGCTGCAACTTCCTCAATTTGGACCCCGGAACCCTTATTGGAAAGTCTCAACAAGGACCCACAATACAATACGaacaaaaacctgaaaaaaccCGAACAAGTGAAGCGAAATGAGGACCCAGGAGTGGAATTGAACCGaggcttttttttgtaaatgcggaggaggaggaggaggaggtggaggaggaggacgggtgaagatgtttatttttctaaGCTGATGGCAGGAGGGAGCAGTGCTACGGTCGCCAGTTCAGATTATTTTCCATATAGACTTCTTCTTCTGGTCATTTAGAGATGATACGTATACTTAgagttaatatattatatacatatattaccgTACGTGTGGACGTGTGCTGGGAGGACCGCCGCTGCAGACTACGGGATTACTGgaggatttattattattattattattattgttattattattattattattattgttattatgggCTCGCGGTTTACGGGCTGCTTTTCGGTGACGGGGGGGTGAACAGAACTTCTAAGAACTATGTGCCAATAACGCCAATATGTGCCACTTTATGTACAGACGGATCGCGTGTCTGGGAGTGGATGGGGGAACTTCCACAGACATCACCAGAAGAGTCATTTCTGTGACGGTACTCTATATCCACCCATCCCTTTTTTTGTATAGAAACGTACAAATATGTATTTGAAATATGTTTTGAAATAGTTCAACAACGATGTGTTGCAGACgtccaaaaatatttataaggagcactatttgattagaaaaaaatatataaaaatgaaggACTGAAGAAAACCTCCTCGCCCAGCGTCTCAGATctacagtatatcacagtgttatattgatatttagGCCCAGTTTTAAACTGAATAGTCTTAAACTCTATTTTTCTACAAAGAGAAAAATCACTCTCAGCTCTCACTCTACACCGCACCCAAACTTTCGGGACTGTTAACCCCCATCTGAGATTCTCACCTTCAGCCAGGAGACGCattctcaatatatatatatatatatatatatactgaattttattcctttttttgttattttgttttgttattttttttaagaccaCCAGGGaattcattacttttaaaaattaaaaaaaaaaaagtaattccaATGAATTTTTAGATCCTAAGCCATGCCACATCcagcttatttttgtttttttaattaatgtatttaacattttttattttttatttttttctgttggatATCTAAACTCATCCGGATCAATGATGTGGATGAAGATGAGGAGTTGATTCAACGATTCGGTGAGAAGGAtgtattttgttctgttttgaagACCACAGTCGCATTAAATcgcttttatattattatttttttcctgctcAGTCgcaaattaaaaagttatttattcgCTGGGTGAGAATTGACATCTGTTGGATTACTACACTCATCTGAATCAATGATGTGGATGAAGATGAGGAGTtgattaaatgattcagtgttttAATGATTAAGTGATTCAATCAGGAGgaaacattttcttttgtttattttgttctgttttaaagacCACAATCACgttgatttaaaaatgtatatttattatattattatttcattttatttttctgctcaGTCGCAAATTCAGAAGTTGTCCCAATGAATGTTTAGATCTTAAGCCATGCCACATCTAgcttatttttgattatttaaaatgaattaattaatctatttttgttttattttatgtgtcaCTGGGTGACAATTGACACCTGTTGGATATCTACGCTCATCTGGATCAATGATGTGGATGAAGAGTCGATTCAACAAttcattgattcattgattcaGTCAGAAGgaaacacatttttgttcacattgatttagaaatatatattggtaatactattattttattatattatactctTTTCTGCTCTGTTGCGAATTCAGAAGTCGTCCCAATCaattttttagaattaatttattttcttttatttcaatttatgACACCTGTTGGATATCTACACTCATCTGGATCAATGATGTGGCTGAGGAGTCGATTCAGCGATTCAGTGATTCAATGATTCAGTCAGGAGGAaacacatgtttttttctgttataaaGACCACCATCGGACTGCCACACTCGAGCcgattcagtgattcagttgtttgttttgtttaagttcactattgcactattgatt

Function

GO: NA

KEGG:

id description
K21387 AJAP1; adherens junction-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65689 lncRNA upstream 82694 271035 ~ 271342 (+) True G48589
TU65669 lncRNA upstream 136535 216847 ~ 217501 (+) True G48583
TU65666 lncRNA upstream 141326 212399 ~ 212710 (+) True G48580
TU65665 lncRNA upstream 143749 210054 ~ 210287 (+) True G48579
TU65632 lncRNA upstream 202577 150934 ~ 151459 (+) True G48558
TU65713 lncRNA downstream 4288 481584 ~ 488309 (+) True G48608
TU65715 lncRNA downstream 4288 481584 ~ 584273 (+) False G48608
TU65697 lncRNA downstream 78494 555790 ~ 559237 (+) True G48594
TU65698 lncRNA downstream 78494 555790 ~ 559237 (+) False G48594
TU65782 lncRNA downstream 111258 588554 ~ 588845 (+) True G48671
XM_022670970.1 mRNA upstream 84514 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 222398 122069 ~ 131638 (+) True LOC111192720
XM_022670987.1 mRNA downstream 937978 1415274 ~ 1461698 (+) True LOC103041629
XM_015603140.2 mRNA downstream 1283516 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 1295623 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 1522278 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 1882626 2359922 ~ 2362224 (+) True LOC103028158
TU65829 other downstream 330859 808155 ~ 811265 (+) True G48714
TU66507 other downstream 2505550 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 2505628 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 2505628 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 3767232 4244528 ~ 4246227 (+) True G49475

Expression Profile