RNA id: XM_022670987.1


Basic Information

Item Value
RNA id XM_022670987.1
length 2905
RNA type mRNA
GC content 0.54
exon number 17
gene id LOC103041629
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1415274 ~ 1461698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caatcagacgAACAACCAGcatcacacctgtacacacctgaagatgatgactgtgatgatgatgatgatgatgacggtgaTGTGTAGCTCATTACTGCTGCTGGGGCTGATCACTGTCAGCGCCTCGTCCAGTGGATCTTCATCATCTGCATCTTCTTCtacctcatcctcatcctcacccAGGATGAAACTTACGTACAAAGAGCTCCAGCAGTTTAATGGTATAAAGCGGTTTGAGTTGGAGCGGTCATGCTGCTTCGGAGCGCTCCTATTGGACGAGGAGAGGGGCCGGCTGTTTGTTGGAGCGCGAAACTTTGTGTTGTCTCTCAGTCTGGACAACATCGCCAAACAAGAACAGAAGatatACTGGCCTGCACCTGTGGAGTGGAGGGAGGAGTGCAACTGGGCAGGAAAAGACATCAATacgGACTGTGTTAACTACGTGAAGGTGCTGCATCACTTTAACCGGACTCACCTGTACGCCTGCGGGACGGGAGCCTTCCACCCTACCTGCGCTTACGTGGAGGTCGGCCAGAAGGTGGAGgatCATGTGTTCCGGATTGACCCGTCTCTAGTGGAGGATGGTAAAGGGAAGAGTCCGTATGACCCTCGACACACACCAGCCTCTGTTCTTATTGGTGATGAGCTGTACTCGGGCGTGGCCACTGACCTGATGGGGCGGGACTTCACAATTTTCCGCAGTCTGGGCCAGAAACCATCAATCCGAACTGAACAGCACGACTCTCGCTGGCTCAacgaGCCGAAGTTCGTCGGAGCGTTTGCGGTTCCAGAAAGTGAGAATCATGATGACGATaaagttttcttcttcttcagagaAACCGCTGTGGAAGCTCAGGGCTTCGGCAAGGTGACCTACGCTCGGATTGGTCAGCTGTGCCGGaatGATATGGGAGAGCGCAGTTTAGTGAACAAGTGGACAACGTTTCTGAAGACTCGACTCGTCTGCTCTGTGCCGGGAAATGACGGCAGCGAAACACACTTCGACGAGCTTAgtaagaaacacacacattacacacacactacacacacactgttaaggGAGTGACCAATTGTGTAAAcgtgtttgtgttttgtgtattgcagtagtgtattcagAGGCTCGGCCGTGTGTCTCTACACTATGAACGATATCCGCCGGGCGTTTCTGGGGCCTTTCGCCCATAAAGAGGGACCCAATTACCAGTGGGTTCCTTACCAGGGTAAAGTTCCTTACCCACGGCCTGGCATGTGTCCCAGTAAGACGTTTGGAAGTTTCGAGTCTACGAAGGGTTTCCCGGATAATGTGATCCAGTTCGCTCGGCATCATCCGCTGATGTTTAACCCCGTAACTCCGCTGGGGAACCGCCCGGTGTTCCTGCGCACCGGCATCCCCTACAGCTTCACACAGATCGCTGTGGACCGGGTCAACGCCGCCGACGGACACTACGACGTCATGTTCATCGGGACAGATGTCGGCACAGTGCTGAAGGTGATCTCTGTGCCGAAGGGAAGCTGGAGCaacacagagctgctgctggaggagctgcaggtcTTTAAGgaCTCCTCATCGATCATCAACATGCAGATCTCCTCTAAACGGCAACAGCTGTATGTAGGTTCTGATACGGGTCTGGCGCAGGTTCCGCTGCACCGCTGCAGTCTGTACGGTAAAGCATGCGCCGAGTGCTGCCTGGCCCGGGACCCGTACTGCGCCTGGGACGGGCACTCCTGCACCCGGTACCTGCCCAACACCAAACGGCGCTTCCGACGGCAGGACGTGAGGAATGGTGATCCGAACACACTCTGTTCAGGAGaGAACCAGAAGCCGCGAGTGGTGGAGAAGAAGCTGTACGCGGTGGAGAGCAGCAGCTCCTTCCTGGAGTGCCTCCCTAAATCCCTGCAGGCTCAGGTCACATGGACCTACCAGAGACACCCCAACAACCCCCGAGAGGAGgtgcgTCTAGACGACCGCGTTCTCCAGACAGACCGAGGTCTGCTGCTGCGCCGCGTTCTGCGTCGAGACGGGGGCGTGTACCAGTGCCACGCCATGGAGCACGGATTCACCCAGACGCTCCTGGGCATCACGCTAGAGGTCGTGCCCTCCTCAAGCCCCTCCCCTTCAGTGCCAAATGCCCACAGCCCCGCCCACAACCAAGGACAGTCCTCCACCAATCAGAAGCTGTGGTACAGGGACTTCATGCAGCTGGTGGATCACCCCAACCTGAGCACGGTAGATCAGATCTGCGAGCAGGTGTGGTCACGGAAGCACGGCCAATCGGCTAAGGGCCAGCCGGATCCGGCCAACGAGGCTCCGCCCATCGACCCCCTACACTCCACCCACAAAAAGTGGAAGCATCTGAAGGAGGTGAGGAAGGGGCGGAACCGCAGAACGCACGATGGAAGACCCTCCCCCCGAGCGCCTCGGAGCGCTGGAGAGTaacgagagagaggagagaaagagagagcgacgaaaagagagagagagagactgagaaagaaagagagaaagaaagagagagagatcactgGAGACAGACAATTCTGCACATTACATCTCATTTAGTGACTATTTatctatcaatcaatcatcTAACACAACTCTACGTTAGATCATAACTCCATTAGATCATAACTCCATCTTCCTTCTGCCCAGTTATTGCCCCACCCTAAACACTCTACTGCCCCAATGACCCCACTTACCCCACCGATGACTGTATACACAGTATACCAGTGGACAGTATGATCTAAAAAATGACATCTTTAGGATTCTGACGCCCTCTAGTGGCCCAAACCTTTAAACAAAGTCCCAAAGTGACACAATGAGCCCcttcttacaccctgcacaaggtgtgtctcgatgctcattgctatcttacaccctgcctagagtctatttttttacgtc

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65947 lncRNA upstream 19651 1392909 ~ 1395623 (+) True G48803
TU65922 lncRNA upstream 172740 1191438 ~ 1242534 (+) True G48781
TU65879 lncRNA upstream 344394 973293 ~ 1070880 (+) True G48760
TU65871 lncRNA upstream 490076 924742 ~ 925198 (+) True G48754
TU65846 lncRNA upstream 590597 824447 ~ 824677 (+) True G48730
TU65890 lncRNA downstream 1325 1463023 ~ 1471342 (+) True G48771
TU65894 lncRNA downstream 1325 1463023 ~ 1470165 (+) False G48771
TU65906 lncRNA downstream 29623 1491321 ~ 1506286 (+) True G48772
TU65962 lncRNA downstream 144777 1606475 ~ 1610296 (+) False G48815
TU65964 lncRNA downstream 144777 1606475 ~ 1611232 (+) True G48815
XM_022670982.1 mRNA upstream 937978 354036 ~ 477296 (+) True ajap1
XM_022670970.1 mRNA upstream 1145752 263730 ~ 269522 (+) True LOC111192744
XM_022670944.1 mRNA upstream 1283636 122069 ~ 131638 (+) True LOC111192720
XM_015603140.2 mRNA downstream 299114 1760812 ~ 1764075 (+) True pym1
XM_022670945.1 mRNA downstream 311221 1772919 ~ 1786362 (+) True LOC103027674
XM_007231153.2 mRNA downstream 537876 1999574 ~ 2001170 (+) True LOC103045867
XM_007231679.3 mRNA downstream 898224 2359922 ~ 2362224 (+) True LOC103028158
XM_007231678.3 mRNA downstream 1003895 2465593 ~ 2474573 (+) True adipor1
TU65829 other upstream 604009 808155 ~ 811265 (+) True G48714
TU66507 other downstream 1521148 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 1521226 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 1521226 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 2782830 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 4157461 5619159 ~ 5627452 (+) True prok1

Expression Profile