RNA id: XM_022671008.1


Basic Information

Item Value
RNA id XM_022671008.1
length 6388
RNA type mRNA
GC content 0.46
exon number 25
gene id eps15
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2747844 ~ 2809424 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAACCTCCCTATATTGCCCCATTGCCTATCGCAGCGCAGGGTGATGGACTAGTGGGAACAGAAACATTATGGCTGCCAGTCTCTCCCTGACTCAGCTTTCAAGTGGGAACCCTGTCTACGACAAGTACTATCGGCAGGTGGATCCATCTGGCAGTGGGCGGGTAGCAGCAGcagacgcagccttgttctTGAAAAGATCTGGCCTTTCAGACCTGGTCCTGGGAAAGATTTGGGACTTGGCAGATTCTGAACGCAAAGGCTTCCTGAACAAACAGcAATTTTTTGTGTCTCTGCGATTGGTGGCCTGCGCTCAGAATGGCCTGGAAGTCTCACCCAAAAGCCTTAATGCGACTGTGCCTCCACCAAAGTTTCAGGACACCAGCAGTCCATTCCAGCCTGGAGCCGTTCCTGTCGACAGCCCCTGGGTGGTCAAGCCGGACGAGAAGCTGAAATATGATGCCATCTTCGACAGTCTCTCGCCGGTGGGTGGCATGCTTACAGGAGACAAGGTCAAACCGGTGCTGCTCAACTCCAACCTCCCCTTCGACATCCTGGGCAGGgtCTGGGAGCTTAGTGATATAGACAGAGATGGAATGCTGGACAAAGATGAGTTTGCAGTGgccATGTATCTGGTGTATAAGGCACTTGAGAATCAGCCTGTGCCTATGACTCTTCCTCCCTCACTGGTTCCACCATCAAAGAGGAAAAAGATCAGCCCTGCTCCTGAGATGCCCCTCCTCCCTTCACCGCCTCCGTCCATCAAAGAAAGAAGTTCAGCTCAGTCTGGGTCCAAAACGTTACCAGCAAAGCCCACGCAACCACAGTGGGTGGTATCTCCTGCAGATAAAGCTAAGTATGATGAGCTGTTCATTAAGACAGACAGTGATATGGACGGCTTGGTGTCGGGTCCAGAGGTGCGGGACATCTTCCTAAAAACGGGACTGCCCTCCGCCACACTCGCACGCATATGGGAGCTGTGTGATATTGGGGACATTGGGAAACTGACCAGAGAGCAGTTTGCTTTGGCTCTCCATCTAATCAATCAGAAGCTCTCCAAAGGCACTGACCCTCCCCAGAATCTCACTCCAGAGATGATCCCACCCTCCGATAGACTGGCGCGACAGAATAACGCTTTGACCTGTCAGGCCGCTGACTTCTCTGCCATCAAGGAGTTGGACTCCCTCAGCAATGAGATCATGGACCTGCAGAAGGAGAAGAGCTCTGTGGAGCAGGAGATCAAAGACAAGGAGGAGAGCATCAGGCAGAGGACCAGTGAGGTTCAGGACCTGCAGGATGAGGTGCAGAAGGAGAGCGAGGAGTTGCGGATCCTGCAGATGGAGAGGCAGGAGGTGCAGGAAGCGCTGGAGAGGCTGGATGAGCAGAAGTTGTTTCTGGAGGAGCAGCTGAAGCTCATACGACAGCAGTGCAGTCAGGAGAACCAGCTGATCCAGTCCCTGCAGGCGGAGCACAGTGAGCAGGAGCAGAGGATTGGGGAGTATGAGGAGGAGCTGGTGAGGGCCAGAGAGgagctgctgcagctgcagaaGGAGACGCGCAATCTGGGAGAGAAAGTTTGCTCGGCTCGGGCTCAGCTCTGCCCCCTGCAGGACGCCGTCAcagagtcacacacacagatagctCAGGAACAGCTGGCCGAGCTGAAGACAGAAGAGCGAGAAGTGACAGCCCAGCTCACCTGGAAAGTCCTGGAGGAAGAGCCCGCTCTGGTTAACGGAACAGCGCCCCCTGCTGAACAGCCCAAACTGCTGCAGTGGCCACAGTTCACGGAACAGCCCGTCGCTAAGCCGAAAGccgaggaggaggaagaggaggatgaggaggagaagAGCCCACAGGATGAGCCTCAGGAGCTGAAGGTCACTGAAGAGCAGCCTGATGAAGAGGTCCCCTCCAGTCcggaggagctggagctgaagaCGGACCCTCTGGAGAACCTGTACACCAGCATGCTGTCCTCAACCGGCACCATCAGCACCGCCTGGCCTCAGAGTGAGACGGAAAACACCAGCTCTCCTGTACCCGTCGTATTGGAGGTAAAGGAAGCAGAAGAGGAGGCAAAGCAGCAGCCAACCATCAGCACTACCAAGGTGGAGTCTCCGGCCCCGGAGCTGAAGGAGGAGCCGTCTCAGCCTGTAATCGCCCATCCTGGCAGCCCCTCCACTGCTGCTGGCATAGATTTCTTCCAGTCTGACCCCTTTACTGACAGTGATCCTTTTAAAGATGACGACCCCTTCTCTAAAGTAGATGTTTCAGATCCTTTCGGCGGTGATCCTTTTAAAGGCTCAGATCCGTTCGCCACGGACTCGTTCTTCAAACAGTCTTCCTCAGCCGCGTTTCCCTCAGGAGACCCCTTCTCCTCCTCAGACCccttcagctccagcacagTTTCTGCTGAACCGGACCTGTTCTCCTCCCAGCTCAACAACTCCGCAGGTTCTGATCCCTTCTCTTCCAGAGTTGAAGCTACAGCAGTAGCGGACCCTTTTACCTCCAGCAGTGAAAACGCTTCATTCACAACCAAGACTGAGACCGAGTCGGACCCTTTCAGTTCAGCGGCTGCAGCCGGAGACGACCCGTTCAGTGCGTCGGATCCACCGGCGAAAAACGTGCCAGCAGCAGCTAATGACCCTTTTGCTCCTGGGGGAACAACAGTGAATGCAGATTCAGATCCAGatCCGTTTGCTACAGTATTTGGTAACGAGTCGTTTGGAAACGAGTCGTTTGGAGGAGGATTTGCAGATTTTAGCAGCCTGGCAAAGtCTAACGGTACAGATCCTTTCGCCTCGTCAAACACGaatagtaaaaatgtatttaaggaGGAGAATCAGTCAGATGTTCCTCCTGCATTACCTCCCAAAACTGGGACCCCTACCAGACCACCCCCTCCTCCACCAGGAAAGCGGTCGAACATCTACCGGTCGGAGTCGTCGGAGTCGTTTCAGCGGCGCGGGCTGTTCGGCTCTCAGGGTTCCGGAGATTTCTCCTCCCTCCCCGCTAAAGACGCCGTGCCGGACCCCTTCGCCCCCTCCACCCCCTGCCAAGCCTCGCGCGACCCAGACAGATTTGCCACCTTTGACAAATACCCCACAGAGGAGGACATGATCGAGTGGgcgaagagagagagtgagcgggAGGAGAGGGAGCGTCTGGCTCGTCTGAcgcagcaggagcaggaggaTCTGGAGCTGGCCATCGCTCTCAGCAAGTCCGAGCTCTCCTGACCAccaggaagaggaggaggaagaaagagggggaagaggaggagaaagaggaggtgGGATGAAGAGCGCAGAGTGAAGAGCTGCAGGAACTCACGGTGCAGGGATagaccacagacacacactcagaatCCCTCTTTTTCAGCCTAACTTTGAGTCTAACTATCTTCATTCAGCTGCAACCAGAGCCGCCTCCTCCTGCAGCAGGAGTGTGGGACATGTTGTTGTACTGTAGGGGGTGAAAAAAGTGGTGAAAAAGGTAAAAGACTAAAGCATCTCCTCTCCCCACTCTGTGTGTCTGAGACTCTGAGgcctgttctgttctgtgtgCTTTTTAAGGTAAAATCAAGTGAATCGAATGGCTGCCTTATAGATTGGTAATTTTATCAGATCCACAGTGCTATGCACTTCATAATCCCATTATAAACACAATTCTGCAGGCATCTTCATTATTCAGGTAGTTGTAAGTTCTGAatctgatgtaaaaaaaaaaaaaaaagctgtttttagtgGAGTGTTTGTTGAGATTTCTCAGTGAAAAAGTGTAAACTCTTAACTAGAGAATTTTGGATGTGCATAAGCGAAAACAGACCCTAGCCTTTTAACACAGCAGCTGCAAGATGACGAGACCAACACTCTGGGAGCTTCATCTTCTAGCTGATGTATGTTTATAATATGGATTTGATGTATTAAAGAACTTATTGACTGGTTGCAAAGCAAAAACCTGATAATTGGCTTAATAATTTCTCTAGTTTCAGTGCAAAAGTGTAAACTCTTAACCAGAGTTATTCTGGGTAACCCAGGAATTCTGGGTATTTATATGATTTGTCAGCATGTGCATAAGCGAAAACAGACCCCCTATTTCTTAGATTTTTGTCAGCGTGTGCATAAGCGAAAACAGACCCTagcttttaaacacagcagCTGCAAGATGACGACCAACACTTTGGGAGCTTCATCTTCTAGCTGATGTATGTTTATAAAATTTGATTATTGGCTTAATAATTTGTCTAGTTTTCCCCATTTTCTGATTACCTAAGTTCATCTAAACACAGAGATCGCATTTTAGCTGAGTATTAGTTTAGATTTCTCAGTGCAAATGTGTAAACTCTTAGCCAGAGAATTTTGGTTATTTCTTTGATTTGTCAGTGTGTGCATAAGCGAAAATAGACCCCAGCTTTTTACACAGCTGCTGCaagttttaatatgtttataatatggattaatgtgttaaataacttattggctggttgcaaagttgaaaaaatcagattattgGCTTAATAATTTCTCTAGTTTTCCCATTTACTTTTgtataaacacaaaaatcataTTACTGACTTACAAACTCTGATGTTCTGCAGTTTTATGGTTTTAGGTTTATAATCGGATTATGAAGTGCATATAAACACATTGACTGACACACAACTCCACTTCCCCCCTGCGTATTGCATTTAGGTTGctatatatgttatttttttaaggtaaatgaatgaaatatctAGAAAGGTTTGGAAACATTTACACTAGATCAGTTGACGTTGGTGACCTGAGAAGCCCAGCTgttctgaatctgaatgatttaagtttaaatgtaatgtgaaaAGTGCTAAAAGTGATCAATCTGTGGTTGAACAGCAGTAAAATGCTGAAAATAGCATTAAGTAACTGGAGATAATTGGAGATAATTGGTGATCTTTCACAGTGTACATCTGGAGATCACCAAACACTGGGCCCCTGATCTTCACTTTAGCTTGATTACTTTATTTGTAGCATCTCAGTCcattaataaaacacttataaATACTACAGAGAATCCAAATTAGAGAAAAATTAGGAAATGCTGCGTTCCACTTGAACAGTGATTCTTGTTGAGTTCCTGTTGAgtgttttttgttaaatgtcttaaaaaatgGTCTAAAATCATTTGAATATTTAACTGGAACACTATAAACTCCAGCTCCCGGCTCCTCTAGATCCTACCTTACGACGTCTGAGGTCAGTGGAATGCAGCATAACTATAACTCTTAATACGAAGTGTCTTTAAAACTCAATCAGGGCCGACCTCACAAATATCAGATTAGTATATAAGGGTCTAAGATACTTTTGGAAAAccaaaaatatcttaaaaactgatgtaagaacttaaaaatgactttttaaagaaATCCTCTTACTAATCCCCTTGcttatgagatttttttttgtttctctgaaGTTCCTCTCCAGTTCCTGGAGGGTTCGATTCAgctcatattaaatatatatttccctgCTTCAGGTCTAATTTAGCAGGGAACTCACTAACTGTGTGCTGAGCATCAGTCCTCCGGGACTGGAATTGAACCGTAGCACACAGGCTCTCCTGATGGGCTTTATTTCCCTGTTGGACGACGCTGTGATTAGGTTTTAAAAGTATTTGTGGGAATGTACAGTAATTGTACAGCATATACCTAACTATATATTGAGTAATTCAGTATATTTGTATCTTGCACTAATCTATCTTAGCTAAAGTAATACCCGTGATGAGATGCTAATGAAAtaatacactataaaaaaacaaacacatgaatTAAAGTGGAGTTTTAATCCCTTTTCACGtctagagaaaaagagaatgtgatGAAACGTCTGCAGTAAAGTGAGGAGTAAAATGTGGGGTTTTGTTTTGATGCCGAAGGAAACAGAGTTTTTTCATGTTATACTTTTTTAGTATTGAAGCTACAGGAAGGTTGGCTGATATAAGAACCTACTGTGTAAAGTTTCAACCACTAAGATAAACTACTAGATATGCACCAAAATTTTAATATTGGACCAAAAACAAAacctaagaaaaataaataaataaaaacatttgtccaaaaatgaaaacaaacaaaattaaaacgTTTGTCCAAAAATGTAAACGTTTAGCCGAAAATGTCTGAAAATTGATCCGaacaaaatttaaacatttgtccaaaactggattaaaacaaaatttaaacattttgcagaaaatgggtcctaatacattttaaacatttggccGAAAATGGATCCaaactaaatttaaatatttgtccGAAAAAGGATCCGAACAAAATTTTAACTTTTGGCTGAAAATGGATCCAAACTAAATTCGAAACATTTGGTCAAAAATGGATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650124.1 lncRNA upstream 23616 2708704 ~ 2724228 (+) True LOC103026017
XR_002650126.1 lncRNA upstream 23616 2708704 ~ 2724228 (+) False LOC103026017
XR_002650128.1 lncRNA upstream 23616 2708704 ~ 2724228 (+) False LOC103026017
XR_002650129.1 lncRNA upstream 23616 2708704 ~ 2724228 (+) False LOC103026017
XR_002650130.1 lncRNA upstream 23616 2708704 ~ 2724228 (+) False LOC103026017
TU66484 lncRNA downstream 30888 2840312 ~ 2840783 (+) True G49163
TU66485 lncRNA downstream 58038 2867462 ~ 2869521 (+) True G49164
TU66483 lncRNA downstream 145830 2955254 ~ 2976029 (+) True G49162
TU66516 lncRNA downstream 286939 3096363 ~ 3100087 (+) True G49185
TU66736 lncRNA downstream 424250 3233674 ~ 3234451 (+) True G49351
XM_007231670.3 mRNA upstream 3392 2736304 ~ 2744452 (+) True LOC103024869
XM_007231671.3 mRNA upstream 13304 2725485 ~ 2734540 (+) True tor3a
XM_022671015.1 mRNA upstream 55060 2674216 ~ 2692784 (+) True osbpl9
XM_022671016.1 mRNA upstream 86388 2616841 ~ 2661456 (+) True LOC107196890
XM_007231672.3 mRNA upstream 131172 2603333 ~ 2616672 (+) True LOC103025499
XM_022671017.1 mRNA downstream 19511 2828935 ~ 2876428 (+) True ttc39a
XM_007231669.3 mRNA downstream 72261 2881685 ~ 2917431 (+) True rnf11
XM_022671018.1 mRNA downstream 173471 2982895 ~ 3152050 (+) True faf1
XM_007231666.3 mRNA downstream 362585 3172009 ~ 3175759 (+) True dmrta2
XM_022671025.1 mRNA downstream 710184 3519608 ~ 4194714 (+) True agbl4
TU65829 other upstream 1936579 808155 ~ 811265 (+) True G48714
TU66507 other downstream 173422 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 173500 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 173500 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1435104 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 2809735 5619159 ~ 5627452 (+) True prok1

Expression Profile