RNA id: XM_022671009.1


Basic Information

Item Value
RNA id XM_022671009.1
length 2828
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC103035089
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2584545 ~ 2597636 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCGCACGCGCACAGCGCGCTCTCAGCAGAAGCGCGTGCCTGTGGAGAGGTGTTCTCAGACTGAGGAGCTCCGGGGCTCCGGGGGCTTCAGCCAGCATGTCTCTGCGGCAGGAGGTGAGCGACGACCCGGATCTGGAGAGCCTGCTGTCCGCGCTCTCCccggaggaggtggaggagctggagcgCGAGATGCTGCTGATTGACCCGGACCCGAGTGTTCCGGTCGGGCTCAGGCAGCGAAACCAGACCGACAAGCAGCCCACCCGGGGGTACGACCGCGAGGCCATGCTGGACTACTGCGAGCGCGAGACCAAGAAACTcatagagagagagctcagcTTCGAGGGCGAGTCTAAGGGCGAGTCTAAAGGCGAGTCTAAAGGCGAAGGCCGTAGACGAGACCGGCTCAGGAGGATGAGGAGTAGAGAGCACAGGAGCTTCTCCAGATCACGAAGCCGCGAGGCATCAGATAAGGACGATTCACTGAACGAAAAGGAAAAGAGACAGGAGGAAAAACCTGTGGACAAAAACTGCGAGGATGGAGAGAAGATTAGAGACGTTGACTTTAAGGAGTCGGACGCAAAAACAAAGTTGGAATTTCAAGGAactgaaagaaataaagatcaGACTGGTGAAGAAAAGgataaagaaaaggaaaaagataaacagacagaaactCCTAAGAAGGATCGAGGCGGCAGCAGGAAAACCTTGGACCTCATCTCTAAACTACAAGAAAAAAAGGACGATAAAAAAGAGACGGAAAAAAAGGAGCTGGAGAGCAAGAGAGGCGAAAACTCGAGAACCAAAGGGTTAATATCCAAACTACAGGTGAATAAagaagcagaggagaaggaaaagagagaaaaagagagggatgtagagaggaaaagagagcagAAAAATGAGAGCAGAACGAAAGGCCTTGTGTCCAAGATGGAGGACGCAAAGAACCAAACTGACACCGGCAAAGTGGGAGAACGGAGGAACCGACAAACGTGGAGAGatgtggagaaagaaagagaaaagaaagacaaagagaaggagaaggaaaagGAGCTGGAGAAGAACgatgagaagaagaagaagacgtaCAACCAAAGAGATAATaatcaaagagagaaagagcaggagAAATGTGAAgcgaaagagaaagagcgagacaGATGGAAAGAGCGTAAGAAAGAGACTGAACTAAGGAAAGGGACGAATAACGAGAAGGACGTTACGAGAAAAGCTGAAACACGTAACAGAGAGAACTGCACCAGTGGAGACGACCAGTCCACCAAAACTGAAGACGATGACGATGATGGAGACGACTGTCTGGACAGCGATACCGGTTCCAGTATGTTTGACGACCTCTTGGAACAGGTGCGCAACAACGACCCGGAACTTACCGAACTTAACATCAACAACTCCGACGTGATTAAGAATGATACGCTGATTCAGTTTGCGACAGGACTTCGCAGCAACACTCACATTAAAACTTTTGCTCTCGCCAACACGAGAGCGGACGATCATGTCGCATTCGCCATTGCCGGGACCTTGCGGGGCAATGCGACGCTGACCGAAATCAACCTAGACTCCAACCATCTCACCGGAAAAGGCATCCTGGCCATCATCGAGTCTTTGCAGCACAACGCAACTCTCACACAGCTTCGCTTTCACAACCAGAGACACATTCTCGGAGGGAAGACAGAGATGGAGATGACTAAGGTCCTAAGGGACAACACTTCCCTGCTCAAGCTGGGGTATCACTTTGAGCTAGCCGGTCCAAGGATGACCATGACCAACATCCTGAGTCGAAACATGGATCGCCAACGGCAGAAACGCCTGGAAGCCCAACGGCTCGCCAAGCAGGACACCCAACCCAGCTCAGCCCAAGCTCAAACAAAAGTCCAAAAGAAGAAGGAGCTTCTACCTGAAACGCCGAAGCCCAAAGGAACACCGAGCTCAAAGCCCAACCATGTTGAGAAGAAAGAGTCCATATTAGCCAAAGTGTCCAAATTCAACAATCCTGCCACAGACCCCAAAACCACTCAATCCAAGCACTCACCTGGCCACGTGCCCTCTAATACACCAGGTAAAAAAGGTGGCGTCAAAAAGGCAGAGTCAAGCCCAGGACCCCCACCACCTCCTTCAGCCCCTGCTCCACCTCCCCCTCCTGCTCCAGGGCTGGACGTTCAGGCCCTGAGACGGTCGCTGAACCCCGTGTCCCAGCGCAAAGCGGACAGCGGCAGAGTTTCAGGCCGAGGATCGGAGAGGAGCTCCAGAGATCAGCTGCTGGACTCCATCAGGaactgcagtgtgaacacaCTCAAGAAGAAcgtcctggatgagttgtctaTGCTGGAGTCCCAACGTGGAGGTTCCGAAGCGTCTGAGGTAGCAGCAGGCAATAAAAACAGAAGAGGAGCGAGACACCTTTTTCAACTTTACCATCTTTTCCAGCTTTACGAGCTTTAAATCTCAAAGTGATCAGTGCGTTTGTCTTTAGGGTCTTACAGCGATAACAGTGCTGCAGTATTTATCAGAGGAACCCTGAATGCTCTGACagactaatctaatctaatctcaTGCACTAAAGAGATAAAGTTTGGGGGCAGGAGACTGGGTGGGGGTTGGAGAGAAATAATAGAGAATTCTTTTAAAAGAAGAAATACAGGTAATTTTACAGGTTTTATAATGAGCACATCATACTAAACTAATGTACATCAAATTGTGTTTCGTTTTATCTGTGCATGTGTGATCTGTACACTTGATTCTTCACTGTGTTTGTTGAAAtgctttgaaaatgttttaatataaaaatacttctgGAAATATA

Function

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66400 lncRNA upstream 105176 2432799 ~ 2479371 (+) True G49116
TU66401 lncRNA upstream 154904 2428120 ~ 2429643 (+) True G49117
TU66409 lncRNA upstream 156636 2426273 ~ 2427911 (+) True G49122
TU66406 lncRNA upstream 158379 2425130 ~ 2426168 (+) False G49122
TU66405 lncRNA upstream 179819 2404515 ~ 2404728 (+) True G49121
TU66451 lncRNA downstream 59560 2657196 ~ 3150588 (+) True G49146
TU66455 lncRNA downstream 73181 2670817 ~ 2672813 (+) True G49150
TU66456 lncRNA downstream 83562 2681198 ~ 2681503 (+) True G49151
TU66460 lncRNA downstream 109387 2707023 ~ 2708224 (+) True G49154
TU66461 lncRNA downstream 109387 2707023 ~ 2709154 (+) False G49154
XM_015600864.2 mRNA upstream 1228 2527469 ~ 2583319 (+) False LOC103026437
XM_007231675.3 mRNA upstream 1228 2527470 ~ 2583319 (+) True LOC103026437
XM_007231674.3 mRNA upstream 1228 2527470 ~ 2583319 (+) False LOC103026437
XM_015600863.2 mRNA upstream 1228 2527470 ~ 2583319 (+) False LOC103026437
XM_015600866.2 mRNA upstream 63128 2510144 ~ 2521419 (+) False LOC103031418
XM_007243571.2 mRNA downstream 1606 2599242 ~ 2602614 (+) True LOC103037045
XM_007231672.3 mRNA downstream 5697 2603333 ~ 2616672 (+) True LOC103025499
XM_022671016.1 mRNA downstream 19205 2616841 ~ 2661456 (+) True LOC107196890
XM_022671015.1 mRNA downstream 76580 2674216 ~ 2692784 (+) True osbpl9
XM_007231671.3 mRNA downstream 127849 2725485 ~ 2734540 (+) True tor3a
TU65829 other upstream 1773282 808155 ~ 811265 (+) True G48714
TU66507 other downstream 385210 2982846 ~ 3013630 (+) False faf1
TU66505 other downstream 385288 2982924 ~ 3013630 (+) False faf1
TU66506 other downstream 385288 2982924 ~ 3013630 (+) False faf1
TU66895 other downstream 1646892 4244528 ~ 4246227 (+) True G49475
TU67370 other downstream 3021523 5619159 ~ 5627452 (+) True prok1

Expression Profile