RNA id: XM_022671047.1


Basic Information

Item Value
RNA id XM_022671047.1
length 2753
RNA type mRNA
GC content 0.50
exon number 17
gene id ahcyl1
representative False

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5213404 ~ 5258615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actgctgATGCTGCCTGCCTGTCCGGAGCCGGAGAGCCGCGAGTAATAATCTGTGATCAGCTCCGCTCTGAGAGAGAAACCCCGCCGGTAACCTCGAGCTCAGCACCGCCGCAGCGCGTCTACCGGCGCTCAGACCGAGACCGCGGCTTCTCTTCCGCAGCGACactccgtgtgtgtgtggtgttctcGGCCGGAGCTCGCGCGCTTCCTCGGGAAGCGGTAGTTCGGTCAGAGCGCGGAGCTAGAGGACAAAACGGAAGGTTACGGGAACATTAGCGAACCGAGCGGTCCTAGTCCCGGCCCAACCGGAGAGACCCGCGAGCTCAGCATGACGGAACCCGGCGTGGAGGCGAAGCTGGAGGTGAAGCAGGCGAGCAAGGAGTTCAAGGAGAGCGAGAACGTGGCGGAGAAGTACTCCGCGATGACCGTCTCCAAGAACAGCGATGTGAACATGAACGTGGGCGAGCTGTCCGCCGCATTCACCGCCGTCCCCGCGCACAAGTCCGTCAAGAAGATTCAGTTTGCCAACCAGGAGGATAAGCAGGAGTTCAGTAAGTTCCCCACCAAGACGGGCCGGCGTTCCCTCTCCCGCTCCATCTCCCAGTCCTCCACCGACAGCTACAGCTCCGCTGCTTCGTACACCGACAGCTCAGATGACGAGACGTCTCCTCGAGAGAAGACTCAGGTCAACTCCACAGGCAGCAGCGATTTCTGCGTGAAGAACATTAAGCAGGCGGAGTTCGGCCGGCGGGAGATCGAGATAGCAGAGCAGGATATGTCTGCTCTGATCTCTTTGAGGAAACGAGCTCAGGGTGAGAAGCCCCTCGCCGGGGCCAAAGTGGTGGGCTGCACTCACATCACTGCTCAAACTGCTGTCCTGATTGAGACGCTGGTGGCTCTGGGTGCTCAGTGTCGCTGGACTGCCTGTAACATCTACTCCACTCAGAATGAGGTGGCTGCTGCCCTGGCAGAAATCGgAGTGGCGGTTTTTGCGTGGAAAGGAGAGTCTGAGGACGACTTCTGGTGGTGCATCGATCGCTGCGTCAACACCGAGGGCTGGCAGGCCAACATGATCTTGGACGATGGTGGTGATCTGACTCACTGGGTGTATAAAAAGTACCCCAGTGTGTTTAAGAAAGTTCAAGGAATTGTGGAGGAGAGCGTCACTGGTGTTCATAGACTCTACCAGCTGTCCAAAGCCGGAAAGCTCTGCGTTCCTGCCATGAACGTCAACGACTCTGTCACCAAGCAGAAGTTCGATAACCTCTACTGCTGCAGGGAGTCCATTCTGGACGGGCTTAAAAGAACCACAGACGTGATGTTCGGGGGGAAGCAGGTGGTGGTCTGTGGGTACGGGGAGGTTGGCAAGGgctgctgctctgctctgaaagctctgggaGCCAtcgtgtgtgtgacagagattGACCCCATCTGTGCCCTGCAGGCCTgCATGGACGGCTTCAAAGTGGTGAAGCTGAACGAAGTGATCCGTCAAATGGACATGGTGATAACCTGCACAGGGAACAAAAACGTGGTGACCCGAGAGCAGCTGGATCGTATGAAGAACGGCTGTATCGTGTGCAATATGGGCCACTCTAACACTGAGATTGATGTGGCGAGTCTGCGGACCCCCGAGCTGACCTGGGAGAGGGTACGCTCTCAGGTGGACCACATCATCTGGCCTGATGGGAAGAGAGTCATCCTGCTGGCTGAGgGACGGCTTCTGAATCTGAGCTGCTCCACAGTGCCCTCGTTTGTGCTTTCCATCACAGCCACAACACAGGCCCTGGCCCTTATAGAGCTGTATAACGCTCCTGAGGGACGCTACAGGCAGGACGTGTATCTGCTGCCCAAGAAGATggatgaATATGTGGCCAGTCTGCATCTGCCTAACTTTGATGCTCACCTCACGGAACTGTCAGATGAGCAGGCCAAGTACATGGGGCTCAATAAGAACGGACCCTTTAAACCAAACTACTACAGATATTAGTAAGTAAGACTGACAACGACCTTCATCAGGGATGAAGAAACCTGCATTAACCAAGCGAACCAAgagatttattttctatttcctgTAAATTTCTAAAAGGACAACTTGATTTTaagtgaattattattattattattattattattattattattattattattattattattattattattattttaacaaatagTGACCaaatacatgtttgtcacatgTAGAGCTATAATTCACTTTTGCTAGCACTTAATTGAActctattatactgtatgtatttgttaTCTTTTAATCACATTATAAGAGGACCGTTGTCCGTTGTCAGGTCTGAAATCGTGCCATATATATATTGGTGGTAGTGAAAGTCTGAGGGGTAAATTCTGTACTATGTCTTTGTTTGTGCTCATTCATTTCagtgcttattttattttattttattttattttattctgtgtcACATGACTGGCTTTACATTTCTGGTCATTCCTCATGTTGAACTGTGCTCCTGTAGTGGTCCAGCTGATGGATCTCTGACCAAATACATGTTATTGGAGCATATTTCAGTGTGCAGACCAATTActcttattattactattatcattatttcatttttcaagTGATTCTTTTCCACACCATCTGTTTAAATTAGTAGTGGAAATGATCCAAGAAGGGTGAGTGCGTTTACATGTTCttaatcagattactgcagcCATCTCCTTATTATGAAATAGATTGGGGTAAACTtaaaaaagcagcataaaag

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0004013 adenosylhomocysteinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67281 lncRNA upstream 12687 5200490 ~ 5200717 (+) True G49792
TU67277 lncRNA upstream 54232 5155142 ~ 5159172 (+) True G49789
TU67278 lncRNA upstream 54232 5155142 ~ 5159172 (+) False G49789
TU67276 lncRNA upstream 64749 5148421 ~ 5148655 (+) True G49788
TU67275 lncRNA upstream 69875 5143256 ~ 5143529 (+) True G49787
TU67335 lncRNA downstream 172814 5431429 ~ 5431637 (+) True G49837
TU67336 lncRNA downstream 183794 5442409 ~ 5442685 (+) True G49838
TU67354 lncRNA downstream 256946 5515561 ~ 5515859 (+) True G49855
TU67352 lncRNA downstream 271191 5529806 ~ 5537630 (+) False LOC111192752
XR_002650135.1 lncRNA downstream 278400 5537015 ~ 5538913 (+) True LOC111192752
XM_022671049.1 mRNA upstream 2578 5201030 ~ 5210826 (+) True nfya
XM_022671048.1 mRNA upstream 5983 5201030 ~ 5207421 (+) False nfya
XM_022671042.1 mRNA upstream 219503 4954277 ~ 4993901 (+) True LOC103035057
XM_007236385.3 mRNA upstream 270321 4930544 ~ 4943083 (+) True LOC103034196
XM_022671041.1 mRNA upstream 270321 4936506 ~ 4943083 (+) False LOC103034196
XM_022671045.1 mRNA downstream 8063 5266678 ~ 5271005 (+) True LOC103043955
XM_007232973.3 mRNA downstream 16041 5274656 ~ 5318448 (+) True kcnc4
XM_022671050.1 mRNA downstream 238054 5496669 ~ 5513671 (+) True alx3
XM_015601208.2 mRNA downstream 265194 5523809 ~ 5529064 (+) True rbm15
XM_007231938.2 mRNA downstream 360697 5619312 ~ 5627452 (+) False prok1
TU66895 other upstream 967177 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 2199774 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 2199774 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 2199774 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 4402139 808155 ~ 811265 (+) True G48714
TU67370 other downstream 360544 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 518437 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 1112905 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 1725575 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 2948727 8207342 ~ 8221162 (+) True G50568

Expression Profile