RNA id: XM_022671049.1


Basic Information

Item Value
RNA id XM_022671049.1
length 2957
RNA type mRNA
GC content 0.45
exon number 7
gene id nfya
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 5201030 ~ 5210826 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGAATGGCTTTCTTCCTTTGTGTGTAGGTCCAAGGGCAGCCCCTGATGGTGCAGGTCAGTGGAGGTCAGCTCATCACCTCCACTGGGCAGCCCATTATGGTGCAGGCCATGTCTGGAGGCCAGGGCCAGACCATTATGCAAGTGCCCGTCTCTGGAGCTCAGGGCCTGCAGCAGATCCAGTTGGTGCAGCCTGGACAGATCCAGCTGCAGGGGGGTCAGACACTGCAGTTGCAGGGACAGCAAGGCCAGGCTCAGCAGATCATCATCCAGCAGCCCCAGACTGCTATCACTGCCGGACAGAACCAGGGCCAACAGATCACAGTACAAGGTCAGCAGGTTGCTCAGACTGCCGAAGGTCAGACTATTGTGTACCAGCCTGTAAATGCAGATGGCACCGTCCTACAGCAAGGCATGATCACTATCCCAGCAGGCACTCTCACTGGCACTCAGATCGTTCAGGCAGCAGGGGGCGCCAACACCTCCACTACCAACAGCGGCCAGGGAACAGTCACGGTCACGCTGCCCATGTCTGGAAACGTGGTCAACACTGGAGGGATGGTCATGATGGTCCCTGGAGGAGGCACCGTACCCACCATCCAGCGCATCCCTCTGCCTGGGGCTGAGATGCTGGAGGAGGAGCCGCTGTACGTCAATGCTAAACAGTACCACCGCATCCTGAAGAGACGTCAAGCCCGCGCCAAGCTGGAGGCTGAGGGCAAGATCCCCAAAGAGAGGAGGAAATACCTGCACGAGTCCCGGCACAGGCACGCCATGCAGAGGAAGCGCGGAGACGGCGGCCGCTTCTTCTCaccaaaagaaaaagaggagatgCTTCTAGCCGGGCAGGTGGTGCCGGAGGACAGTCAGGGCGGAGAGGAGACAGTGGCCCAGATGATTCGTGTTTCGTAGCAGCAGGTTGAAGAACGACCTTCACCTTCTCCTCTTCACTTTCCTCCTGAATAACTCCTGAAGAAGCCCCTTGGAAATACAACCAGCAcccaaaaatggagaaaaaataaatacagtgcaTATTGTGAAACCAGCACTTAGGccctgttcacactacacgactttagGCCTGATTCGACTGTATTTAGAGGCTTCCATTAAAACAACACTTTGTTGTTTGCTCGTTTTTTTCGGTGTGTAAACTGGTTAAAAAGAAAGGTATGATCCGAATGAACAGTAAATATCTAGCAGGTTGAAAATCTGCACCTGTGGGCGACTCTAAATTCGGTACTGTGAAAAGTGTTGCAACTGGACGACTTGCTAGAGCACGGGGTGAGGAGAAAGCCGAGTcttcatccattttttttttttttttacttattcatattcttttgttttatttcagcgTGCTTTCGCTGTAAATCAGCACACAGACAATGTTGTATTGTATACATCTGGAATATGGTAGCACCTTTAGTGCTTagtgtttttgcatgtttttggctacgttcacacagcaggcaAGTGAAAGTGtcgcaaataaatatatttattaaaggcTGTTCACGCAATCTTTTAAAGGTGACCCATATGTGACATTTGCTTAAGCAGTTCATGTTTCTAAACTGAGTGCATGCTCAAAATTACagcgcttcacgtgaagtttcggtttcatcttttTCCAGAATCTTAGCAGCTATACAGCATTTTATCTCACTGTGAAAAATGGACTCAGAAAAATTACTCAGCCACGGACattgatttgatttggtttgtgTCCTTGGTTTCTTTTAAGCTGTTTATTTTCCATTCTCACTGCATTCTgccattttttatgttaaaaaacacAGTGATTGTGATACTAGCCTTCTAATTCACACTGCCACATAAGTGACGTCTGTCACGGATTTGTGccacatttacctgctgtgtgaacgctGCCTTTGCCGTGtgttcctcttggtgagagactcTTGTGTAATCCATGATTCTGTGTCGCCGATTACAACATTACAAGTTGACGACTCTGAAactcgtgtagtgtgaacctggcattactTAATGCAGCTCCAGCCCAGTGTCTTTTGCCTCCTCTTTGCACGTTCAGCCATAAGTGAGGGCCTGGATTTAATCCTGGTTTTAACCAGTGCCAGTAGTGACAAGCAAAAAGGAGCATCATTACATTACCTTCAGAGATTAGCCAATAATTCGGTTTGTACAAAAGCTAAACTACAATGCTAACAGGAAAACACAGGCTTGGATATCTGTGATATGTTCTTCAGAACTGACCATAGAACAAATGTACTGGGGTTAGTTGTCAGTGTATAAAGATTATTTTAAGTTACTCAGTTTCATAATTTTGTctcctgcttgtttttttgtcatgtgGCGCTTTTGCATATgaaccagaaaaaaaatgttttaaaaagtaagatGGGTAGTGAGGGCAGCGAGTCATGTGACCCAGTTAGtgcaaaactgtttttttttttttttcttgttgcaTAATAACCCAAAGTGTATTGGTATATTGTGTGATCTGTGtagttagtgtttttttttttgtttttcttcagtgaAAGAATGTGTTGAAAAGGGGAATGAAGAGGGGTGGGTTAAAGCATGGAATTTTGCAATTCATCCCCCTGTTCTCCAAGTGGGGGCTTCTTTCTGCCTCTGGCCCACAGCCTTGTACATTTATTGCTTGTAACAtgaacacttttttacattcaAATTTTGATAATCTTAATGGAATTTGTAATTTAGATGAATTAGAGGAAAGTTGTCATACCGCAAAATCTACCATTGTTCTCTGTCGCCGATGGTCTTTTTGCACTACACGTCTTCCCATCTTATTTGAAACAGCCATTTTTTAATCCCTCTCCCCTAATTCTGCCCTGGCAGGTAAATGTAGATACTTTTTTGAGGAATTACGTTAGACGTTGAAGTCTTTGAACATGCTGTATTTTGATTAAATTGTGTCCGGTCAGTGGCAAACATCCACA

Function

GO: NA

KEGG:

id description
K08064 NFYA, HAP2; nuclear transcription factor Y, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67281 lncRNA upstream 313 5200490 ~ 5200717 (+) True G49792
TU67277 lncRNA upstream 41858 5155142 ~ 5159172 (+) True G49789
TU67278 lncRNA upstream 41858 5155142 ~ 5159172 (+) False G49789
TU67276 lncRNA upstream 52375 5148421 ~ 5148655 (+) True G49788
TU67275 lncRNA upstream 57501 5143256 ~ 5143529 (+) True G49787
TU67293 lncRNA downstream 16595 5227421 ~ 5265359 (+) True G49801
TU67335 lncRNA downstream 220603 5431429 ~ 5431637 (+) True G49837
TU67336 lncRNA downstream 231583 5442409 ~ 5442685 (+) True G49838
TU67354 lncRNA downstream 304735 5515561 ~ 5515859 (+) True G49855
TU67352 lncRNA downstream 318980 5529806 ~ 5537630 (+) False LOC111192752
XM_022671042.1 mRNA upstream 207129 4954277 ~ 4993901 (+) True LOC103035057
XM_007236385.3 mRNA upstream 257947 4930544 ~ 4943083 (+) True LOC103034196
XM_022671041.1 mRNA upstream 257947 4936506 ~ 4943083 (+) False LOC103034196
XM_022671039.1 mRNA upstream 291828 4889708 ~ 4909202 (+) True pdpn
XM_022671040.1 mRNA upstream 291828 4889712 ~ 4909202 (+) False pdpn
XM_022671046.1 mRNA downstream 2578 5213404 ~ 5258615 (+) True ahcyl1
XM_022671047.1 mRNA downstream 2578 5213404 ~ 5258615 (+) False ahcyl1
XM_022671045.1 mRNA downstream 55852 5266678 ~ 5271005 (+) True LOC103043955
XM_007232973.3 mRNA downstream 63830 5274656 ~ 5318448 (+) True kcnc4
XM_022671050.1 mRNA downstream 285843 5496669 ~ 5513671 (+) True alx3
TU66895 other upstream 954803 4244528 ~ 4246227 (+) True G49475
TU66507 other upstream 2187400 2982846 ~ 3013630 (+) False faf1
TU66505 other upstream 2187400 2982924 ~ 3013630 (+) False faf1
TU66506 other upstream 2187400 2982924 ~ 3013630 (+) False faf1
TU65829 other upstream 4389765 808155 ~ 811265 (+) True G48714
TU67370 other downstream 408333 5619159 ~ 5627452 (+) True prok1
TU67445 other downstream 566226 5777052 ~ 5788733 (+) True LOC103023397
TU67633 other downstream 1160694 6371520 ~ 6376705 (+) True G50063
trnae-cuc other downstream 1773364 6984190 ~ 6984261 (+) True trnae-cuc
TU68311 other downstream 2996516 8207342 ~ 8221162 (+) True G50568

Expression Profile