RNA id: XR_002650054.1


Basic Information

Item Value
RNA id XR_002650054.1
length 1314
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id LOC111192642
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25358002 ~ 25378241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACTAACTGGCTAATATTTTGCAGTTTTAGCTAGCCaatgctaacgctagctaactaggttaTCTAACTAAgctaatgttttagctaatgttagttagctagctgactagttagctaactatctagCTAGTGCTCGCTATCAGTCTAACCTAGTTAGTTAATGCTAGGTAGGTTATGTTAGTTATCTAACAAATACAATTAGTTTGTGAATAATACAAAAGGGTCTTCAAAAATATGAGTTGGAGATTGTCAAATGCTGGCGTGTTAAGTGTTTTTATCAGCAGGGTGAAGAAAGCTTTGATTCACTTCAAGGGCTGGTGTTATCACTGCAGATTGAAAtgctctctctgtccctctctctaaAGGAGTTCTGTGACAGGGATACATAATCAGCCACTGGCAGAGCTTTCATTAAAACCTTCAGGAATAATGTCGACTTCTTCATCGGATCTGTCCGGTTCGTCGGTTGACGCAAAGGTGAGCACCAACGATACTACTGCAGACGAGCAGGAGGAACGATTAACCCCTGGCGAtcagcacacagacagacagaggtaAATGGAAATGCCTGAATGGAAATCATCATACTTTATGTGGCAATAACGAGGCCCTGATTCCGGGATCAAGTTAGCCACTGCTCAAGGTCCATTGTTTCAAGGCTGAGTGGTCTTTGCAGCAATAAGAGCAAGAGTAACCCCCCCCTCAACCACCACACAACCCTTCCATGTCTCACCGTCGCTGGTCTCCCCCAGCTCCAGCCTTCAGAGCTAATTAGTTTCAGAGGGAATGGGAAAGGGGGCTCCAACCAAGCCCTTCCCCAGCACAGCAACCAAGTGTAGAGGAGATGCATTAGTGAGACAAATACGGGGGAAGGCTCAGCCCCGCTGTAAAACTGCGGGAACTACTGTCGCAGAGATGCATTTTGGGGGGTTACGCACAACATCAAAAAGCATCAGATCCCACCGTCTGGAAAATGGGATTGGACACGGCAGTCCGTTTTAATCTCCAGCAGGTGAAACTTTTCCATGTGTGGTATCCCTGAGCCACATCCTCTTCCATGTGCAAAGATGTCTCTTTTCTGATTTAATAGATGGACCCAGTTTTCCACCTTTACTGTAAGTTGAGGAGATCTAGTTTACGTCTGAATGCAGTGATAACCCatgttttttggtaaaatgTGTTGTTgcactattaaaaaaacaaacaaaaaaataaatgatgaaatGCGTTCTTTGGAGCAGTGCCAAAGAAGACCTATTTTTGGATCTCTAAAGAACCCTGTGGCAATGCATATTGTTTTAGCTTTATCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73222 lncRNA upstream 132356 25225117 ~ 25226098 (+) True G54310
TU73217 lncRNA upstream 221460 25136435 ~ 25136994 (+) True G54306
TU73211 lncRNA upstream 249636 25107112 ~ 25108818 (+) False map3k8
TU73214 lncRNA upstream 259930 25098267 ~ 25098524 (+) True G54303
TU73184 lncRNA upstream 404623 24950670 ~ 24953831 (+) False G54281
TU73306 lncRNA downstream 89813 25468054 ~ 25471996 (+) True G54376
TU73352 lncRNA downstream 174301 25552542 ~ 25560844 (+) True LOC111192644
XR_002650055.1 lncRNA downstream 182168 25560409 ~ 25561370 (+) False LOC111192644
TU73452 lncRNA downstream 267874 25646115 ~ 25646745 (+) True G54478
TU73466 lncRNA downstream 350142 25728383 ~ 25728597 (+) True G54489
XM_007260774.3 mRNA upstream 12355 25323117 ~ 25346099 (+) True snx2
XM_007260775.3 mRNA upstream 12355 25323117 ~ 25346099 (+) False snx2
XM_007260776.3 mRNA upstream 12355 25323204 ~ 25346099 (+) False snx2
XM_022670386.1 mRNA upstream 54339 25297056 ~ 25304115 (+) True sncaip
XM_022670392.1 mRNA upstream 249583 25092562 ~ 25108871 (+) True map3k8
XM_007260803.3 mRNA downstream 20742 25398983 ~ 25441210 (+) True prdm6
XM_022670394.1 mRNA downstream 20742 25398983 ~ 25439759 (+) False prdm6
XM_022670397.1 mRNA downstream 144734 25522975 ~ 25531959 (+) False nudt12
XM_022670398.1 mRNA downstream 144766 25523007 ~ 25531959 (+) True nudt12
XM_022670396.1 mRNA downstream 144766 25523007 ~ 25531959 (+) False nudt12
TU72536 other upstream 3436860 21919225 ~ 21921594 (+) True G53804
XR_454832.3 other upstream 4532780 20794025 ~ 20825674 (+) False fbxo11
TU72167 other upstream 4797620 20557884 ~ 20560834 (+) False cript
TU72063 other upstream 4931251 20419221 ~ 20427203 (+) False LOC103044634
TU73348 other downstream 167751 25545992 ~ 25549470 (+) False srp19
trnaw-cca_1 other downstream 186420 25564661 ~ 25564732 (+) True trnaw-cca_1
trnaw-cca_2 other downstream 187001 25565242 ~ 25565313 (+) True trnaw-cca_2
trnaw-cca_3 other downstream 188654 25566895 ~ 25566966 (+) True trnaw-cca_3
trnaw-cca_4 other downstream 190905 25569146 ~ 25569217 (+) True trnaw-cca_4

Expression Profile