RNA id: XR_002650088.1


Basic Information

Item Value
RNA id XR_002650088.1
length 1440
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC111192688
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42366132 ~ 42422813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAGCCAAAGCAGCCACACAGCGATCCTGCAGAGATGAACAAAGAAGAGAAGTCGTCTTCAGCGTTCCTCCTGAGAACTCTCAGTATCAACAGGCTCATTTCCTACACGGTTTGATGGAGCAGGTCGAGAAAGGGCTCAGATGATCCCCGCCCACAAAGCGCGTGCCCTCGAATCATATGCGCTTGAGCAAAAGGGCGCTCGATACGAGTGCACGCGCCTGCTCTGCGAGCCACGAGGTTCCTATCAGTGCTGAAAGAGGGCGGCGGAGAGAAGGAGCACATATTGGGAGATTCATTGTTAGAAGAAACATGCCAGCAGCGTGAGAAACTTCAACCATGAATGTTCCCATACACCTCAGCCCAGTCCAGCCCATCCCGTCCAAGCCCAGCCCAGCCCAGCCCGGCCCAGCTGCATGCAGACCAGCCCTAAGTCTGGTAGGTATGTATTGGAATTGTTATTCTCAAAGAAAGTTATAATATGGCCTCTAATTATGTAAGACTGTTAGACATTGTTCAACTTAGGGCTGTAATTAATGTTACTGATTAGTGTAGCAGTTAACTAATCTGatgatatgttttttatataagagTCAATGAGacactgattatttttgtgGGCTCTTTAATGTAGAATGTTTAAATGTAGAAAGTACTGGTATTTAGAGAGTAAATATATAGTTTCTTggacacttttggagacacagaccaagTTGAGTGTTTTGTGCTTCTGTCTCCAGCACTGCAGCACTTTGTAGTGCAGTGcttttacaaaagaataagtataaatgtgtataaatcacattgtcgattatattgatTAAGAACTCCAGCCCTAATAAATATCCGACATTCTATTGAGTTTTCACAGTCTTGtgtataactataaatagctgtAAAGCTACATGGTTAAACGAGTGTGGAGTCAGTGtaatttgtttatgtttaaataaatatgttatatgttaaagCTAATACAAAATGTGTTGTCCTTAACGAGACACAAAAAGGGTTAATATAggttaaattaaaagtaatcaCGCCTGAAGATGTATTAAACCAAAACATTCCTACAAATAAAGGTGTTATAAAAGGTTTTTTGAGAGATCCACTTTTGATCCTATTAATGTATAAAGGCAAAACGAATTCTCTCAACGTAAAGGTTTACAAGGTTACAAATCTTCTTTATGGAAACAAACATGATTCTTCTGTGGCATCCCCCAAAGAGCCTATTGTAGCACCTTCTGTATAaagactgtaaaacactgtattattgtttttcttatttgaaaGTGTATAACATTTAGAACAGATAAACACTTTATACATCTAAGATCAAGCATTAAAACCCTTTAGATAGTGTACTATAGATTGGAGCaatgctgtaaggatttgattgtattcagtgacAAGAATGGTAGTGAGGACAAAATGCTGATTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78462 lncRNA upstream 235098 42128190 ~ 42131034 (+) True G58201
TU78430 lncRNA upstream 312243 42035950 ~ 42053889 (+) True ndufa7
TU78434 lncRNA upstream 315023 42050141 ~ 42051109 (+) True G58177
TU78357 lncRNA upstream 336078 42010046 ~ 42030054 (+) True G58114
TU78335 lncRNA upstream 602554 41758283 ~ 41763578 (+) True G58096
TU78537 lncRNA downstream 143735 42566548 ~ 42570478 (+) False LOC103040535
TU78538 lncRNA downstream 143735 42566548 ~ 42570478 (+) False LOC103040535
TU78539 lncRNA downstream 143735 42566548 ~ 42570478 (+) False LOC103040535
TU78541 lncRNA downstream 143735 42566548 ~ 42570478 (+) False LOC103040535
TU78542 lncRNA downstream 143735 42566548 ~ 42576703 (+) False LOC103040535
XM_007247936.3 mRNA upstream 288189 42076474 ~ 42077943 (+) True LOC103036755
XM_007247993.2 mRNA upstream 298203 42062298 ~ 42067929 (+) True LOC103027595
XM_022670708.1 mRNA upstream 306720 42042327 ~ 42059412 (+) True LOC103027292
XM_007247935.3 mRNA upstream 327218 42035839 ~ 42038914 (+) False ndufa7
XM_022670706.1 mRNA upstream 389084 41948020 ~ 41977048 (+) False dpp9
XM_007247943.3 mRNA downstream 8677 42431490 ~ 42532518 (+) True espn
XM_007247944.3 mRNA downstream 8678 42431491 ~ 42532518 (+) False espn
XM_007247945.3 mRNA downstream 8678 42431491 ~ 42532518 (+) False espn
XM_015605504.2 mRNA downstream 8679 42431492 ~ 42530799 (+) False espn
XM_007247946.3 mRNA downstream 8680 42431493 ~ 42532518 (+) False espn
TU78480 other upstream 84162 42208721 ~ 42281970 (+) True G58211
TU78429 other upstream 327150 42035950 ~ 42038982 (+) False ndufa7
TU78242 other upstream 927221 41438027 ~ 41438911 (+) True G58025
TU78217 other upstream 988702 41374819 ~ 41377430 (+) False LOC103032352
TU78022 other upstream 1685577 40675040 ~ 40680555 (+) True G57856
TU78548 other downstream 154379 42577192 ~ 42626114 (+) True G58256
trnar-ucg_3 other downstream 416025 42838838 ~ 42838910 (+) True trnar-ucg_3
TU78895 other downstream 1237969 43660782 ~ 43661647 (+) True G58529
XR_002650089.1 other downstream 2156313 44579126 ~ 44583918 (+) False LOC103028384
TU79126 other downstream 2172420 44595233 ~ 44600960 (+) True G58696

Expression Profile