RNA id: XR_002650092.1


Basic Information

Item Value
RNA id XR_002650092.1
length 638
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC111192692
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46325449 ~ 46330506 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATGTGGGCGGATACGCACGGCTGTATCTCTGGCTCTGATTGGTCTATTTTGACACAGAATGGCTCATTTGAAAGCGGAAAGTGTCTACAATTGGACGAAACGGCTGTCAGTCAAAGTCAATGGAGCATTTTGAATTTCGTGCTGTGTTTTTTCGACGCTGAATAAATTATGAGCGCTTTTCTTCGTAAAAGTCCTCACGCTCTGAGTCTGATAAGAGGACATCTGTGGCTAAATGGAAAGCTGtatactacttttatttctcaaCCCTGATGGATTAAATTTCGATGGGGAAGTTCAGGATTTAAATACTCCAGTGAAAAATAGCGTTTTTTTCATCTTGGgcaTCAGCAACTGGTGCCCAAAGTGGAAGCCCAGACTGCAGAGAGGTGCCGTGATGCTGCGGCGGATGCTATTCGGGTTATTGATCCATATCTGCTTCTTTTGGTCCGGACAGGTTTTTCTTGGCTAGTATGGCTATTTTTTGAATGCAAACAATGCAGCTATGAGCGCAGACCTTTACACTCCTGAGTCCAATTAGAAGTTTTAATGAGACTGCATAAAGGTGGACACGTCCCAGAAGCTTTTTCATTGTTGCATGCTGCACTAGTTTTTATAGAAAATGCACGCAAAATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79764 lncRNA upstream 28026 46285076 ~ 46297423 (+) True G59173
TU79753 lncRNA upstream 68638 46251699 ~ 46256811 (+) True G59163
XR_002650091.1 lncRNA upstream 109092 46209741 ~ 46216357 (+) True LOC111192691
TU79727 lncRNA upstream 203987 46116727 ~ 46121462 (+) True G59141
TU79803 lncRNA downstream 42132 46372638 ~ 46434592 (+) False G59197
TU79798 lncRNA downstream 46277 46376783 ~ 46377313 (+) True G59195
TU79801 lncRNA downstream 100746 46431252 ~ 46438034 (+) False G59197
TU79802 lncRNA downstream 100746 46431252 ~ 46434592 (+) True G59197
TU79812 lncRNA downstream 105200 46435706 ~ 46437360 (+) True G59203
XM_022670771.1 mRNA upstream 138549 46122861 ~ 46186900 (+) False LOC111192690
XM_022670772.1 mRNA upstream 138555 46123124 ~ 46186894 (+) True LOC111192690
XM_022670760.1 mRNA upstream 255167 46057474 ~ 46070282 (+) False LOC103044102
XM_022670965.1 mRNA downstream 75248 46405754 ~ 46423234 (+) True LOC111192738
XM_022670967.1 mRNA downstream 365973 46696479 ~ 46697515 (+) True LOC111192740
XM_007237033.2 mRNA downstream 497462 46827968 ~ 46851232 (+) True mmp23b
XM_007237040.3 mRNA downstream 577776 46908282 ~ 46923292 (+) True LOC103022408
XM_007237031.3 mRNA downstream 626600 46957106 ~ 46967434 (+) True LOC103046622
TU79487 other upstream 535295 45789711 ~ 45790154 (+) True G58971
XR_002650090.1 other upstream 1458611 44852780 ~ 44866838 (+) False LOC103029434
TU79126 other upstream 1724489 44595233 ~ 44600960 (+) True G58696
TU79125 other upstream 1724489 44595922 ~ 44600960 (+) False G58696
XR_002650089.1 other upstream 1741531 44579126 ~ 44583918 (+) False LOC103028384
TU79888 other downstream 521858 46852364 ~ 46881891 (+) True G59257
TU80591 other downstream 2539661 48870167 ~ 48879623 (+) True G59782
TU80616 other downstream 2667654 48998160 ~ 48998471 (+) True G59806
TU80792 other downstream 3093010 49423516 ~ 49437613 (+) True G59961
XR_002650102.1 other downstream 4308988 50639494 ~ 50652274 (+) False LOC103045694

Expression Profile