Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_002650133.1 |
| length | 487 |
| lncRNA type | inter_gene |
| GC content | 0.52 |
| exon number | 3 |
| gene id | LOC111192750 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035902.1 |
| NCBI id | CM008305.1 |
| chromosome length | 52532229 |
| location | 4330195 ~ 4365579 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005085 | guanyl-nucleotide exchange factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU67028 | lncRNA | upstream | 32628 | 4294830 ~ 4297567 (+) | True | G49571 |
| TU66896 | lncRNA | upstream | 84968 | 4244528 ~ 4245227 (+) | False | G49475 |
| TU66878 | lncRNA | upstream | 90322 | 4229511 ~ 4239873 (+) | False | spata6 |
| TU66877 | lncRNA | upstream | 99232 | 4229511 ~ 4230963 (+) | False | spata6 |
| TU66865 | lncRNA | upstream | 111861 | 4113712 ~ 4218334 (+) | True | G49460 |
| TU67047 | lncRNA | downstream | 38450 | 4404029 ~ 4453720 (+) | True | G49586 |
| TU67052 | lncRNA | downstream | 105940 | 4471519 ~ 4525653 (+) | True | G49589 |
| TU67048 | lncRNA | downstream | 160579 | 4526158 ~ 4632053 (+) | True | G49587 |
| TU67049 | lncRNA | downstream | 160579 | 4526158 ~ 4552226 (+) | False | G49587 |
| TU67069 | lncRNA | downstream | 272958 | 4638537 ~ 4641062 (+) | True | G49606 |
| XM_022671029.1 | mRNA | upstream | 99208 | 4199939 ~ 4230987 (+) | True | spata6 |
| XM_022671025.1 | mRNA | upstream | 135481 | 3519608 ~ 4194714 (+) | True | agbl4 |
| XM_007235278.2 | mRNA | upstream | 288493 | 4020453 ~ 4041702 (+) | True | bend5 |
| XM_007235279.3 | mRNA | upstream | 288493 | 4021915 ~ 4041702 (+) | False | bend5 |
| XM_007231666.3 | mRNA | upstream | 1154436 | 3172009 ~ 3175759 (+) | True | dmrta2 |
| XM_022670972.1 | mRNA | downstream | 28122 | 4393701 ~ 4519665 (+) | True | bcar3 |
| XM_022671039.1 | mRNA | downstream | 524129 | 4889708 ~ 4909202 (+) | True | pdpn |
| XM_022671040.1 | mRNA | downstream | 524133 | 4889712 ~ 4909202 (+) | False | pdpn |
| XM_007236385.3 | mRNA | downstream | 564965 | 4930544 ~ 4943083 (+) | True | LOC103034196 |
| XM_022671041.1 | mRNA | downstream | 570927 | 4936506 ~ 4943083 (+) | False | LOC103034196 |
| TU66895 | other | upstream | 83968 | 4244528 ~ 4246227 (+) | True | G49475 |
| TU66507 | other | upstream | 1316565 | 2982846 ~ 3013630 (+) | False | faf1 |
| TU66505 | other | upstream | 1316565 | 2982924 ~ 3013630 (+) | False | faf1 |
| TU66506 | other | upstream | 1316565 | 2982924 ~ 3013630 (+) | False | faf1 |
| TU65829 | other | upstream | 3518930 | 808155 ~ 811265 (+) | True | G48714 |
| TU67370 | other | downstream | 1253580 | 5619159 ~ 5627452 (+) | True | prok1 |
| TU67445 | other | downstream | 1411473 | 5777052 ~ 5788733 (+) | True | LOC103023397 |
| TU67633 | other | downstream | 2005941 | 6371520 ~ 6376705 (+) | True | G50063 |
| trnae-cuc | other | downstream | 2618611 | 6984190 ~ 6984261 (+) | True | trnae-cuc |
| TU68311 | other | downstream | 3841763 | 8207342 ~ 8221162 (+) | True | G50568 |
