RNA id: trnaw-cca_1


Basic Information

Item Value
RNA id trnaw-cca_1
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnaw-cca_1
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25564661 ~ 25564732 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650055.1 lncRNA upstream 3291 25560409 ~ 25561370 (+) False LOC111192644
TU73352 lncRNA upstream 3817 25552542 ~ 25560844 (+) True LOC111192644
TU73306 lncRNA upstream 92665 25468054 ~ 25471996 (+) True G54376
XR_002650053.1 lncRNA upstream 186420 25358002 ~ 25378241 (+) False LOC111192642
XR_002650054.1 lncRNA upstream 186420 25358454 ~ 25378241 (+) True LOC111192642
TU73452 lncRNA downstream 81383 25646115 ~ 25646745 (+) True G54478
TU73466 lncRNA downstream 163651 25728383 ~ 25728597 (+) True G54489
TU73476 lncRNA downstream 212362 25777094 ~ 25778913 (+) True G54499
TU73477 lncRNA downstream 212362 25777094 ~ 25796977 (+) False G54499
TU73479 lncRNA downstream 250684 25815416 ~ 25815745 (+) True G54501
XM_007260762.2 mRNA upstream 15167 25546012 ~ 25549494 (+) True srp19
XM_022670397.1 mRNA upstream 32702 25522975 ~ 25531959 (+) False nudt12
XM_022670398.1 mRNA upstream 32702 25523007 ~ 25531959 (+) True nudt12
XM_022670396.1 mRNA upstream 32702 25523007 ~ 25531959 (+) False nudt12
XM_007260803.3 mRNA upstream 123451 25398983 ~ 25441210 (+) True prdm6
XM_007254046.3 mRNA downstream 37669 25602401 ~ 25612117 (+) True LOC103035659
XM_007254048.3 mRNA downstream 60514 25625246 ~ 25633257 (+) True LOC103036292
XM_022670402.1 mRNA downstream 72727 25637459 ~ 25640853 (+) True LOC103021869
XM_007254047.3 mRNA downstream 77574 25642306 ~ 25651303 (+) True LOC103035969
XM_007254057.3 mRNA downstream 965576 26530308 ~ 26534076 (+) False aaed1
TU73348 other upstream 15191 25545992 ~ 25549470 (+) False srp19
TU72536 other upstream 3643067 21919225 ~ 21921594 (+) True G53804
XR_454832.3 other upstream 4738987 20794025 ~ 20825674 (+) False fbxo11
TU72167 other upstream 5003827 20557884 ~ 20560834 (+) False cript
TU72063 other upstream 5137458 20419221 ~ 20427203 (+) False LOC103044634
trnaw-cca_2 other downstream 510 25565242 ~ 25565313 (+) True trnaw-cca_2
trnaw-cca_3 other downstream 2163 25566895 ~ 25566966 (+) True trnaw-cca_3
trnaw-cca_4 other downstream 4414 25569146 ~ 25569217 (+) True trnaw-cca_4
trnaw-cca_5 other downstream 5751 25570483 ~ 25570554 (+) True trnaw-cca_5
trnaw-cca_6 other downstream 6836 25571568 ~ 25571639 (+) True trnaw-cca_6

Expression Profile