RNA id: trnaw-cca_37


Basic Information

Item Value
RNA id trnaw-cca_37
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnaw-cca_37
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25597013 ~ 25597084 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650055.1 lncRNA upstream 35643 25560409 ~ 25561370 (+) False LOC111192644
TU73352 lncRNA upstream 36169 25552542 ~ 25560844 (+) True LOC111192644
TU73306 lncRNA upstream 125017 25468054 ~ 25471996 (+) True G54376
XR_002650053.1 lncRNA upstream 218772 25358002 ~ 25378241 (+) False LOC111192642
TU73452 lncRNA downstream 49031 25646115 ~ 25646745 (+) True G54478
TU73466 lncRNA downstream 131299 25728383 ~ 25728597 (+) True G54489
TU73476 lncRNA downstream 180010 25777094 ~ 25778913 (+) True G54499
TU73477 lncRNA downstream 180010 25777094 ~ 25796977 (+) False G54499
TU73479 lncRNA downstream 218332 25815416 ~ 25815745 (+) True G54501
XM_007260762.2 mRNA upstream 47519 25546012 ~ 25549494 (+) True srp19
XM_022670397.1 mRNA upstream 65054 25522975 ~ 25531959 (+) False nudt12
XM_022670398.1 mRNA upstream 65054 25523007 ~ 25531959 (+) True nudt12
XM_022670396.1 mRNA upstream 65054 25523007 ~ 25531959 (+) False nudt12
XM_022670394.1 mRNA upstream 157254 25398983 ~ 25439759 (+) False prdm6
XM_007254046.3 mRNA downstream 5317 25602401 ~ 25612117 (+) True LOC103035659
XM_007254048.3 mRNA downstream 28162 25625246 ~ 25633257 (+) True LOC103036292
XM_022670402.1 mRNA downstream 40375 25637459 ~ 25640853 (+) True LOC103021869
XM_007254047.3 mRNA downstream 45222 25642306 ~ 25651303 (+) True LOC103035969
XM_007254057.3 mRNA downstream 933224 26530308 ~ 26534076 (+) False aaed1
trnaw-cca_36 other upstream 1263 25595679 ~ 25595750 (+) True trnaw-cca_36
trnaw-cca_35 other upstream 2096 25594846 ~ 25594917 (+) True trnaw-cca_35
trnaw-cca_34 other upstream 2929 25594013 ~ 25594084 (+) True trnaw-cca_34
trnaw-cca_33 other upstream 3510 25593432 ~ 25593503 (+) True trnaw-cca_33
trnaw-cca_32 other upstream 4343 25592599 ~ 25592670 (+) True trnaw-cca_32
trnaw-cca_38 other downstream 760 25597844 ~ 25597915 (+) True trnaw-cca_38
trnaw-cca_39 other downstream 1593 25598677 ~ 25598748 (+) True trnaw-cca_39
XR_002650058.1 other downstream 939968 26537052 ~ 26551570 (+) False LOC103040153
TU73715 other downstream 1365808 26962892 ~ 26973026 (+) True LOC103023473
TU73716 other downstream 1423160 27020244 ~ 27022891 (+) True G54682