RNA id: trnaw-cca_4


Basic Information

Item Value
RNA id trnaw-cca_4
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnaw-cca_4
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25569146 ~ 25569217 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650055.1 lncRNA upstream 7776 25560409 ~ 25561370 (+) False LOC111192644
TU73352 lncRNA upstream 8302 25552542 ~ 25560844 (+) True LOC111192644
TU73306 lncRNA upstream 97150 25468054 ~ 25471996 (+) True G54376
XR_002650053.1 lncRNA upstream 190905 25358002 ~ 25378241 (+) False LOC111192642
TU73452 lncRNA downstream 76898 25646115 ~ 25646745 (+) True G54478
TU73466 lncRNA downstream 159166 25728383 ~ 25728597 (+) True G54489
TU73476 lncRNA downstream 207877 25777094 ~ 25778913 (+) True G54499
TU73477 lncRNA downstream 207877 25777094 ~ 25796977 (+) False G54499
TU73479 lncRNA downstream 246199 25815416 ~ 25815745 (+) True G54501
XM_007260762.2 mRNA upstream 19652 25546012 ~ 25549494 (+) True srp19
XM_022670397.1 mRNA upstream 37187 25522975 ~ 25531959 (+) False nudt12
XM_022670398.1 mRNA upstream 37187 25523007 ~ 25531959 (+) True nudt12
XM_022670396.1 mRNA upstream 37187 25523007 ~ 25531959 (+) False nudt12
XM_022670394.1 mRNA upstream 129387 25398983 ~ 25439759 (+) False prdm6
XM_007254046.3 mRNA downstream 33184 25602401 ~ 25612117 (+) True LOC103035659
XM_007254048.3 mRNA downstream 56029 25625246 ~ 25633257 (+) True LOC103036292
XM_022670402.1 mRNA downstream 68242 25637459 ~ 25640853 (+) True LOC103021869
XM_007254047.3 mRNA downstream 73089 25642306 ~ 25651303 (+) True LOC103035969
XM_007254057.3 mRNA downstream 961091 26530308 ~ 26534076 (+) False aaed1
trnaw-cca_3 other upstream 2180 25566895 ~ 25566966 (+) True trnaw-cca_3
trnaw-cca_2 other upstream 3833 25565242 ~ 25565313 (+) True trnaw-cca_2
trnaw-cca_1 other upstream 4414 25564661 ~ 25564732 (+) True trnaw-cca_1
TU73348 other upstream 19676 25545992 ~ 25549470 (+) False srp19
TU72536 other upstream 3647552 21919225 ~ 21921594 (+) True G53804
trnaw-cca_5 other downstream 1266 25570483 ~ 25570554 (+) True trnaw-cca_5
trnaw-cca_6 other downstream 2351 25571568 ~ 25571639 (+) True trnaw-cca_6
trnaw-cca_7 other downstream 3685 25572902 ~ 25572973 (+) True trnaw-cca_7
trnaw-cca_8 other downstream 4516 25573733 ~ 25573804 (+) True trnaw-cca_8
trnaw-cca_9 other downstream 5096 25574313 ~ 25574384 (+) True trnaw-cca_9