Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012021 |
| length | 927 |
| lncRNA type | retained_intron |
| GC content | 0.48 |
| exon number | 2 |
| gene id | XLOC_006094 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 31520537 ~ 31535508 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008150 | biological_process | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070209-185 | Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human PCNX4 (pecanex 4). |
| ensembl_id | ENSDART00000138720 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00011994 | lncRNA | upstream | 576393 | 30951267 ~ 30955038 (+) | True | XLOC_006075 |
| TCONS_00013627 | lncRNA | upstream | 602770 | 30920554 ~ 30928661 (+) | True | XLOC_006074 |
| TCONS_00013626 | lncRNA | upstream | 853788 | 30676825 ~ 30677643 (+) | True | XLOC_006067 |
| TCONS_00011972 | lncRNA | upstream | 1297751 | 30228101 ~ 30233680 (+) | False | XLOC_006062 |
| TCONS_00011974 | lncRNA | upstream | 1301081 | 30228121 ~ 30230350 (+) | True | XLOC_006062 |
| TCONS_00013628 | lncRNA | downstream | 274085 | 31806520 ~ 31837960 (+) | False | XLOC_006101 |
| TCONS_00013629 | lncRNA | downstream | 274346 | 31806781 ~ 31815664 (+) | False | XLOC_006101 |
| TCONS_00013631 | lncRNA | downstream | 274346 | 31806781 ~ 31850508 (+) | False | XLOC_006101 |
| TCONS_00013630 | lncRNA | downstream | 274346 | 31806781 ~ 31850508 (+) | False | XLOC_006101 |
| TCONS_00013632 | lncRNA | downstream | 308352 | 31840787 ~ 31850508 (+) | True | XLOC_006101 |
| TCONS_00012019 | mRNA | upstream | 17281 | 31497236 ~ 31514150 (+) | True | XLOC_006093 |
| TCONS_00012018 | mRNA | upstream | 37144 | 31479814 ~ 31494287 (+) | True | XLOC_006092 |
| TCONS_00012017 | mRNA | upstream | 51630 | 31473190 ~ 31479801 (+) | True | XLOC_006091 |
| TCONS_00012016 | mRNA | upstream | 108085 | 31402067 ~ 31423346 (+) | True | XLOC_006090 |
| TCONS_00012014 | mRNA | upstream | 138562 | 31390313 ~ 31392869 (+) | False | XLOC_006089 |
| TCONS_00012022 | mRNA | downstream | 13095 | 31545530 ~ 31560661 (+) | False | XLOC_006095 |
| TCONS_00012023 | mRNA | downstream | 13095 | 31545530 ~ 31562781 (+) | False | XLOC_006095 |
| TCONS_00012024 | mRNA | downstream | 13095 | 31545530 ~ 31575102 (+) | False | XLOC_006095 |
| TCONS_00012025 | mRNA | downstream | 13377 | 31545812 ~ 31580190 (+) | False | XLOC_006095 |
| TCONS_00012026 | mRNA | downstream | 17750 | 31550185 ~ 31563011 (+) | True | XLOC_006095 |
| TCONS_00011984 | other | upstream | 694655 | 30836656 ~ 30836776 (+) | True | XLOC_006071 |
| TCONS_00011978 | other | upstream | 1019708 | 30511607 ~ 30511723 (+) | True | XLOC_006065 |
| TCONS_00011975 | other | upstream | 1279574 | 30251741 ~ 30251857 (+) | True | XLOC_006063 |
| TCONS_00011948 | other | upstream | 1745410 | 29778337 ~ 29786021 (+) | False | XLOC_006055 |
| TCONS_00011936 | other | upstream | 1776004 | 29755293 ~ 29755427 (+) | True | XLOC_006054 |
| TCONS_00012034 | other | downstream | 237386 | 31769821 ~ 31777526 (+) | True | XLOC_006100 |
| TCONS_00012037 | other | downstream | 859948 | 32392383 ~ 32392499 (+) | True | XLOC_006105 |
| TCONS_00012044 | other | downstream | 1314058 | 32846493 ~ 32846609 (+) | True | XLOC_006111 |
| TCONS_00012045 | other | downstream | 1452219 | 32984654 ~ 32984769 (+) | True | XLOC_006113 |
| TCONS_00012076 | other | downstream | 2893813 | 34426248 ~ 34426365 (+) | True | XLOC_006133 |
