Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012023 |
| length | 1788 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 6 |
| gene id | XLOC_006095 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 31545530 ~ 31580190 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0090263 | positive regulation of canonical Wnt signaling pathway | biological_process |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0043124 | negative regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0030145 | manganese ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0043169 | cation binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| GO:0004722 | protein serine/threonine phosphatase activity | molecular_function |
| GO:0000287 | magnesium ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-991102-15 | Predicted to enable magnesium ion binding activity; manganese ion binding activity; and phosphoprotein phosphatase activity. Predicted to be involved in negative regulation of I-kappaB kinase/NF-kappaB signaling and positive regulation of canonical Wnt signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. Orthologous to human PPM1A (protein phosphatase, Mg2+/Mn2+ dependent 1A). |
| ensembl_id | ENSDART00000178460 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00012021 | lncRNA | upstream | 13095 | 31531431 ~ 31532435 (+) | True | XLOC_006094 |
| TCONS_00011994 | lncRNA | upstream | 590492 | 30951267 ~ 30955038 (+) | True | XLOC_006075 |
| TCONS_00013627 | lncRNA | upstream | 616869 | 30920554 ~ 30928661 (+) | True | XLOC_006074 |
| TCONS_00013626 | lncRNA | upstream | 867887 | 30676825 ~ 30677643 (+) | True | XLOC_006067 |
| TCONS_00011974 | lncRNA | upstream | 1315180 | 30228121 ~ 30230350 (+) | True | XLOC_006062 |
| TCONS_00013628 | lncRNA | downstream | 243739 | 31806520 ~ 31837960 (+) | False | XLOC_006101 |
| TCONS_00013629 | lncRNA | downstream | 244000 | 31806781 ~ 31815664 (+) | False | XLOC_006101 |
| TCONS_00013631 | lncRNA | downstream | 244000 | 31806781 ~ 31850508 (+) | False | XLOC_006101 |
| TCONS_00013630 | lncRNA | downstream | 244000 | 31806781 ~ 31850508 (+) | False | XLOC_006101 |
| TCONS_00013632 | lncRNA | downstream | 278006 | 31840787 ~ 31850508 (+) | True | XLOC_006101 |
| TCONS_00012020 | mRNA | upstream | 10022 | 31520537 ~ 31535508 (+) | False | XLOC_006094 |
| TCONS_00012019 | mRNA | upstream | 31380 | 31497236 ~ 31514150 (+) | True | XLOC_006093 |
| TCONS_00012018 | mRNA | upstream | 51243 | 31479814 ~ 31494287 (+) | True | XLOC_006092 |
| TCONS_00012017 | mRNA | upstream | 65729 | 31473190 ~ 31479801 (+) | True | XLOC_006091 |
| TCONS_00012016 | mRNA | upstream | 122184 | 31402067 ~ 31423346 (+) | True | XLOC_006090 |
| TCONS_00012027 | mRNA | downstream | 20253 | 31583034 ~ 31605982 (+) | False | XLOC_006096 |
| TCONS_00012028 | mRNA | downstream | 41207 | 31603988 ~ 31606247 (+) | True | XLOC_006096 |
| TCONS_00012029 | mRNA | downstream | 85490 | 31648271 ~ 31681951 (+) | True | XLOC_006097 |
| TCONS_00012030 | mRNA | downstream | 125192 | 31687973 ~ 31707870 (+) | True | XLOC_006098 |
| TCONS_00012031 | mRNA | downstream | 154039 | 31716820 ~ 31748970 (+) | True | XLOC_006099 |
| TCONS_00011984 | other | upstream | 708754 | 30836656 ~ 30836776 (+) | True | XLOC_006071 |
| TCONS_00011978 | other | upstream | 1033807 | 30511607 ~ 30511723 (+) | True | XLOC_006065 |
| TCONS_00011975 | other | upstream | 1293673 | 30251741 ~ 30251857 (+) | True | XLOC_006063 |
| TCONS_00011948 | other | upstream | 1759509 | 29778337 ~ 29786021 (+) | False | XLOC_006055 |
| TCONS_00011936 | other | upstream | 1790103 | 29755293 ~ 29755427 (+) | True | XLOC_006054 |
| TCONS_00012034 | other | downstream | 207040 | 31769821 ~ 31777526 (+) | True | XLOC_006100 |
| TCONS_00012037 | other | downstream | 829602 | 32392383 ~ 32392499 (+) | True | XLOC_006105 |
| TCONS_00012044 | other | downstream | 1283712 | 32846493 ~ 32846609 (+) | True | XLOC_006111 |
| TCONS_00012045 | other | downstream | 1421873 | 32984654 ~ 32984769 (+) | True | XLOC_006113 |
| TCONS_00012076 | other | downstream | 2863467 | 34426248 ~ 34426365 (+) | True | XLOC_006133 |
