Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012027 |
| length | 974 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 3 |
| gene id | XLOC_006096 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 31583034 ~ 31606247 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0003407 | neural retina development | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0001654 | eye development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1282 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within gene expression and neural retina development. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; gill; heart; integument; and kidney. Human ortholog(s) of this gene implicated in optic disc anomalies with retinal and/or macular dystrophy. Orthologous to human SIX6 (SIX homeobox 6). |
| ensembl_id | ENSDART00000111763 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00012021 | lncRNA | upstream | 50599 | 31531431 ~ 31532435 (+) | True | XLOC_006094 |
| TCONS_00011994 | lncRNA | upstream | 627996 | 30951267 ~ 30955038 (+) | True | XLOC_006075 |
| TCONS_00013627 | lncRNA | upstream | 654373 | 30920554 ~ 30928661 (+) | True | XLOC_006074 |
| TCONS_00013626 | lncRNA | upstream | 905391 | 30676825 ~ 30677643 (+) | True | XLOC_006067 |
| TCONS_00011974 | lncRNA | upstream | 1352684 | 30228121 ~ 30230350 (+) | True | XLOC_006062 |
| TCONS_00013628 | lncRNA | downstream | 200538 | 31806520 ~ 31837960 (+) | False | XLOC_006101 |
| TCONS_00013629 | lncRNA | downstream | 200799 | 31806781 ~ 31815664 (+) | False | XLOC_006101 |
| TCONS_00013631 | lncRNA | downstream | 200799 | 31806781 ~ 31850508 (+) | False | XLOC_006101 |
| TCONS_00013630 | lncRNA | downstream | 200799 | 31806781 ~ 31850508 (+) | False | XLOC_006101 |
| TCONS_00013632 | lncRNA | downstream | 234805 | 31840787 ~ 31850508 (+) | True | XLOC_006101 |
| TCONS_00012025 | mRNA | upstream | 2844 | 31545812 ~ 31580190 (+) | False | XLOC_006095 |
| TCONS_00012024 | mRNA | upstream | 7932 | 31545530 ~ 31575102 (+) | False | XLOC_006095 |
| TCONS_00012026 | mRNA | upstream | 20023 | 31550185 ~ 31563011 (+) | True | XLOC_006095 |
| TCONS_00012023 | mRNA | upstream | 20253 | 31545530 ~ 31562781 (+) | False | XLOC_006095 |
| TCONS_00012022 | mRNA | upstream | 22373 | 31545530 ~ 31560661 (+) | False | XLOC_006095 |
| TCONS_00012029 | mRNA | downstream | 42289 | 31648271 ~ 31681951 (+) | True | XLOC_006097 |
| TCONS_00012030 | mRNA | downstream | 81991 | 31687973 ~ 31707870 (+) | True | XLOC_006098 |
| TCONS_00012031 | mRNA | downstream | 110838 | 31716820 ~ 31748970 (+) | True | XLOC_006099 |
| TCONS_00012032 | mRNA | downstream | 151349 | 31757331 ~ 31783586 (+) | False | XLOC_006100 |
| TCONS_00012033 | mRNA | downstream | 163827 | 31769809 ~ 31783663 (+) | False | XLOC_006100 |
| TCONS_00011984 | other | upstream | 746258 | 30836656 ~ 30836776 (+) | True | XLOC_006071 |
| TCONS_00011978 | other | upstream | 1071311 | 30511607 ~ 30511723 (+) | True | XLOC_006065 |
| TCONS_00011975 | other | upstream | 1331177 | 30251741 ~ 30251857 (+) | True | XLOC_006063 |
| TCONS_00011948 | other | upstream | 1797013 | 29778337 ~ 29786021 (+) | False | XLOC_006055 |
| TCONS_00011936 | other | upstream | 1827607 | 29755293 ~ 29755427 (+) | True | XLOC_006054 |
| TCONS_00012034 | other | downstream | 163839 | 31769821 ~ 31777526 (+) | True | XLOC_006100 |
| TCONS_00012037 | other | downstream | 786401 | 32392383 ~ 32392499 (+) | True | XLOC_006105 |
| TCONS_00012044 | other | downstream | 1240511 | 32846493 ~ 32846609 (+) | True | XLOC_006111 |
| TCONS_00012045 | other | downstream | 1378672 | 32984654 ~ 32984769 (+) | True | XLOC_006113 |
| TCONS_00012076 | other | downstream | 2820266 | 34426248 ~ 34426365 (+) | True | XLOC_006133 |
