RNA id: TCONS_00012032


Basic Information

Item Value
RNA id TCONS_00012032
length 2154
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_006100
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31757331 ~ 31783663 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGGCAGTCGCACCTGGGAAAAAAAGGGTGAGTTCAGAGCGAAGGAAGGAGAAATCCAGAGACGCAGCACGTTGTCGGAGAGGAAAAGAGTCTGAGGTGTTTTATGAGCTGTCCAGAGAACTCCCTCTCCCCCACAGCGTCACCTCTAACCTGGATAAAGCATCGGTCATGAGACTGGCTCTCAGTTACCTGCGCCTGCGTAAACTGCTGAACAGCGaTGTGCTGGAGAAGGAGACTGCATTAGACACTCAGTGGAACGGTTCATTTCTGAAAGCTCTGGACGGGTTTCTTTTGGTTCTTTCAGCTGATGGTGATATTGTCTACCTTTCAGAGAATGTCAGCAAGTGCTTGGGCCTTCCTCAGATTGAACTCACTGGTCACAGTGTGTTTGAGTTTACTCATCCGTGTGACCATGAGGAGCTCAGAGAAATGCTGGCACACAGATTTGGTCTGTCTAAGAAATCGAAAGATCAAAACACAAACAGAAGTTTCCTGCTGAGGATGAAATGCacgctgaccagcagagggcgCACTGTCAATGTTAAATCTGCCTCCTGGAAGGTGCTGCGCTGTTCGGGCCGTATCCACACAGCAGATGGTGTTGAGAAGGAGGTGTGTGAAGAAAAAAACACGTGTTCGACGTACCTGGTGCTCATCTGCGAGTCTATTCCCCATCCGGCGAACATTGAGGCTCCTCTGGATTCCAGAACGTTCCTCAGCCGCCACACTTTAGACATGCGCTTCACCTACTGTGATGAGAGGATCACAGAGCTCTTGGGTTTTGATCCAGAGGATGTGTTACAGCATTCTGTGTATGAATACTATCATGCGTTGGATTCAGACCACATGACCAAAACACACCACAGCCTTTTTGTGAAGGGGCAAGTGTGTACCGGACAGTACCGTCTGCTGGCTAAAGCCGGAGGGTTTGTTTGGGCAGAGACTCAGGCCACTGTGATCTATAACAGTAAAAACTCTCAGGCACAGTGTGTGGTTTGTGTCAACTACATCCTCAGTGGCATTGAACAACCCAAACAAATCCTGTCGCTTCAGCAAACCaacagcacaaaaataaaacaggaaGAACACCAGGAGGAGGTTGAGGTGACCATGGCAGAGTTGAAAGAGGAGGAAAAGGAGATGGACAAAGAAGATGAGGAGTGTGTGCAGCCTGTAGTGCAACATAACAGCCTGAAGGGGGAGACAGAGGCGCTGACTGTAGCAGATCCTGTTCTCACGCTGGATATCAACATCACTGACTCAGCGATCTCTGTCCTGACAGAAATTCCTCTCTACAACGATGTCATGTTGCCCTCTTCAGATGTCCTGCTCCCCCTCTCGCCCCTATCTCCCCCGTGCTCCTCTCTAAATGATGATGAAGCCTCCACAGGCCATCTACAACACGACCAATTCCCTTTCCAACAGTCCTCTGACTCCTCCAGATCACAGGTTGATCTACCGGTGGATTCAGAACTatgtgaccagctaaaaccagatcACGTTGAGAAACACTTTTCCATGGATATAGAGTCCAAGACACAGGGAGTGGGTTTGGATCTGGAGATGTTGGCTCCATACATTCCCATGGATGATGACTTCCAGCTGCGGACTGTTTCTCCAGTCAGGCCCATGTGCTCCAGTCCATGTTCAGGGCTTGATCTGACCCCGTCCAGCAGCACACAAACCAGCCCTGCTCTTTCGGCAGCCACTCCAGATTCGCTATCCTGTGATCCCGtgcagcagaaaaacaaaaccaCAGTGCAGGACCACAGCAGAGAAATTATTCAAGACAGTGATATTTCTTATAAATGTCAGACCAACCCGAAGCTACTCAAGAGGAAACTCGAGACCATACCGCTGTCTGAAGCAATAAGACTGGGGTCTGTGCTGCAGGTTGTTACCGATTTTCCAGAGAAAAAGGTCCGCAAAACAGATGCTCCATCATCAGAAGGAATTCGTCATGCTACGATACTGTTGCTGCCATCCAATGTTGCAAGTCGGTTATTGAGCAGATCGTCAGAGGGCGGAGCCATAGCTATGCCCCTCCCCCAAATCACCCATCACGACTGTGAGGTAAATGCACCTGTGATTGGACGACAGCACCTGCTGCAGGGGGAGGAGCTTCTTTGTGCCTTggatttagttatttaa

Function

GO:

id name namespace
GO:1905517 macrophage migration biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0071456 cellular response to hypoxia biological_process
GO:0005634 nucleus cellular_component
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080917-55 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including hematopoietic stem cell differentiation; macrophage migration; and regulation of angiogenesis. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in carcinoma (multiple); diabetic retinopathy; myocardial infarction; prostate cancer; and type 2 diabetes mellitus. Orthologous to human HIF1A (hypoxia inducible factor 1 subunit alpha).

Ensembl:

ensembl_id ENSDART00000044282

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012021 lncRNA upstream 224896 31531431 ~ 31532435 (+) True XLOC_006094
TCONS_00011994 lncRNA upstream 802293 30951267 ~ 30955038 (+) True XLOC_006075
TCONS_00013627 lncRNA upstream 828670 30920554 ~ 30928661 (+) True XLOC_006074
TCONS_00013626 lncRNA upstream 1079688 30676825 ~ 30677643 (+) True XLOC_006067
TCONS_00011974 lncRNA upstream 1526981 30228121 ~ 30230350 (+) True XLOC_006062
TCONS_00013628 lncRNA downstream 22934 31806520 ~ 31837960 (+) False XLOC_006101
TCONS_00013629 lncRNA downstream 23195 31806781 ~ 31815664 (+) False XLOC_006101
TCONS_00013631 lncRNA downstream 23195 31806781 ~ 31850508 (+) False XLOC_006101
TCONS_00013630 lncRNA downstream 23195 31806781 ~ 31850508 (+) False XLOC_006101
TCONS_00013632 lncRNA downstream 57201 31840787 ~ 31850508 (+) True XLOC_006101
TCONS_00012031 mRNA upstream 8361 31716820 ~ 31748970 (+) True XLOC_006099
TCONS_00012030 mRNA upstream 49461 31687973 ~ 31707870 (+) True XLOC_006098
TCONS_00012029 mRNA upstream 75380 31648271 ~ 31681951 (+) True XLOC_006097
TCONS_00012028 mRNA upstream 151084 31603988 ~ 31606247 (+) True XLOC_006096
TCONS_00012027 mRNA upstream 151349 31583034 ~ 31605982 (+) False XLOC_006096
TCONS_00012035 mRNA downstream 360784 32144370 ~ 32150443 (+) False XLOC_006104
TCONS_00012036 mRNA downstream 364752 32148338 ~ 32149779 (+) True XLOC_006104
TCONS_00012038 mRNA downstream 662583 32446169 ~ 32453932 (+) True XLOC_006106
TCONS_00012039 mRNA downstream 670676 32454262 ~ 32456842 (+) True XLOC_006107
TCONS_00012040 mRNA downstream 852611 32636197 ~ 32641537 (+) True XLOC_006108
TCONS_00011984 other upstream 920555 30836656 ~ 30836776 (+) True XLOC_006071
TCONS_00011978 other upstream 1245608 30511607 ~ 30511723 (+) True XLOC_006065
TCONS_00011975 other upstream 1505474 30251741 ~ 30251857 (+) True XLOC_006063
TCONS_00011948 other upstream 1971310 29778337 ~ 29786021 (+) False XLOC_006055
TCONS_00011936 other upstream 2001904 29755293 ~ 29755427 (+) True XLOC_006054
TCONS_00012037 other downstream 608797 32392383 ~ 32392499 (+) True XLOC_006105
TCONS_00012044 other downstream 1062907 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012045 other downstream 1201068 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012076 other downstream 2642662 34426248 ~ 34426365 (+) True XLOC_006133
TCONS_00012081 other downstream 3099660 34883246 ~ 34883370 (+) True XLOC_006136

Expression Profile

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