Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001018 |
| length | 637 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 7 |
| gene id | XLOC_000588 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 46493944 ~ 46594288 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0005085 | guanyl-nucleotide exchange factor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-090312-122 | Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within intracellular signal transduction. Is expressed in several structures, including Kupffer's vesicle; chondrocyte; immature eye; mandibular arch skeleton; and yolk syncytial layer. Orthologous to human MCF2L (MCF.2 cell line derived transforming sequence like). |
| ensembl_id | ENSDART00000144821 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002870 | lncRNA | upstream | 272335 | 46307015 ~ 46307550 (+) | True | XLOC_000585 |
| TCONS_00003131 | lncRNA | upstream | 307559 | 46263451 ~ 46272326 (+) | True | XLOC_000584 |
| TCONS_00001012 | lncRNA | upstream | 328061 | 46249979 ~ 46251824 (+) | True | XLOC_000583 |
| TCONS_00002869 | lncRNA | upstream | 331294 | 46247618 ~ 46248591 (+) | True | XLOC_000582 |
| TCONS_00002868 | lncRNA | upstream | 360724 | 46217503 ~ 46219161 (+) | True | XLOC_000581 |
| TCONS_00003133 | lncRNA | downstream | 128459 | 46719096 ~ 46726957 (+) | False | XLOC_000591 |
| TCONS_00003132 | lncRNA | downstream | 128459 | 46719096 ~ 46726957 (+) | False | XLOC_000591 |
| TCONS_00003134 | lncRNA | downstream | 128911 | 46719548 ~ 46726957 (+) | False | XLOC_000591 |
| TCONS_00003135 | lncRNA | downstream | 128934 | 46719571 ~ 46726957 (+) | False | XLOC_000591 |
| TCONS_00003136 | lncRNA | downstream | 128970 | 46719607 ~ 46726957 (+) | False | XLOC_000591 |
| TCONS_00001014 | mRNA | upstream | 127199 | 46404968 ~ 46452686 (+) | False | XLOC_000587 |
| TCONS_00001015 | mRNA | upstream | 129615 | 46405294 ~ 46450270 (+) | True | XLOC_000587 |
| TCONS_00001011 | mRNA | upstream | 383778 | 46194333 ~ 46196107 (+) | True | XLOC_000580 |
| TCONS_00001008 | mRNA | upstream | 549308 | 46026457 ~ 46030577 (+) | True | XLOC_000578 |
| TCONS_00001006 | mRNA | upstream | 559160 | 45958904 ~ 46020725 (+) | False | XLOC_000577 |
| TCONS_00001020 | mRNA | downstream | 7865 | 46598502 ~ 46612049 (+) | False | XLOC_000589 |
| TCONS_00001021 | mRNA | downstream | 8127 | 46598764 ~ 46617283 (+) | True | XLOC_000589 |
| TCONS_00001022 | mRNA | downstream | 61978 | 46652615 ~ 46654528 (+) | True | XLOC_000590 |
| TCONS_00001024 | mRNA | downstream | 357373 | 46948010 ~ 46957351 (+) | True | XLOC_000594 |
| TCONS_00001026 | mRNA | downstream | 500831 | 47091468 ~ 47105214 (+) | False | XLOC_000596 |
| TCONS_00001013 | other | upstream | 178249 | 46400612 ~ 46401636 (+) | True | XLOC_000586 |
| TCONS_00000997 | other | upstream | 811355 | 45768416 ~ 45768530 (+) | True | XLOC_000573 |
| TCONS_00000982 | other | upstream | 1409233 | 45170046 ~ 45170652 (+) | True | XLOC_000563 |
| TCONS_00000975 | other | upstream | 1570269 | 45007403 ~ 45009616 (+) | True | XLOC_000559 |
| TCONS_00000971 | other | upstream | 1582115 | 44986996 ~ 44997770 (+) | False | XLOC_000558 |
| TCONS_00001025 | other | downstream | 498864 | 47089501 ~ 47095865 (+) | False | XLOC_000596 |
| TCONS_00001027 | other | downstream | 505188 | 47095825 ~ 47101796 (+) | True | XLOC_000596 |
| TCONS_00001046 | other | downstream | 1306632 | 47897269 ~ 47897385 (+) | True | XLOC_000608 |
| TCONS_00001047 | other | downstream | 1323458 | 47914095 ~ 47914209 (+) | True | XLOC_000609 |
| TCONS_00001054 | other | downstream | 2874104 | 49464741 ~ 49472325 (+) | True | XLOC_000620 |
