RNA id: TCONS_00012057


Basic Information

Item Value
RNA id TCONS_00012057
length 758
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_006119
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33256847 ~ 33259799 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAATAAACGAAGCGTCTTTTGAACTTGTGTGTGAGCTGTCCACAGCAACATCCACAGTAGAAACAAATCTCTATGCGATAATGGCGAACAGCACTCGGAGTTTACTCGAAAGCTCTTATGATATCGGTCCATGTGACTCGACACAGTCAAGTTCAATTGTAGAACAGCTTCAAGCGGTGAAGGATAAAGAAATCTGCATGGTAGACTTTAGGAATTGCATCGTTTTCCAATGCATAACATGCAACACTGTGCTTGGAGACTCTCTCGGCGTCTGCGGGGAAGTGGAGAGCAGCCAAAGTGTCATTTGTTTGAAAGTTACTGAGGATGTGATGGTGAATGAAAAGCACGAGATGTGTTCGAGCGGTCAGCTGGCTTCCTCCACCTACCAAACCCTTCTCTGCACTGGCTGTCATGATGCTGTTGGCTTGGTTCTTCATTCCACCCCGAAGCACCTGTCTGCTTTACGAAATCTCTTCCTTTTACGAAAAGAGCTGATAAACTGCTACATTCTAAGAAGCGGCACATGTGTTAAAGCCTCCAAAATCAACTTCAAACACAGACTCATGGACAAAAATATCAAAAAGCTGAAGGAGTACTTAGAAACTAAACTGAAGCAGGTAGACATTCTGGAGCAAATGATGGAAAAAATGTGCACACATGACGTGAACTAAAATTGCAGACTTGGaagatgtaaatatttttattggataacttttttgttaaaactttaaataaaattaatatttttgtattgta

Function

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-090313-328 Predicted to enable metal ion binding activity. Predicted to be involved in CENP-A containing nucleosome assembly and chromosome segregation. Predicted to act upstream of or within cell division. Predicted to be located in chromosome. Predicted to be active in chromatin; chromosome, centromeric region; and nucleus. Orthologous to human OIP5 (Opa interacting protein 5).

Ensembl:

ensembl_id ENSDART00000146144

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012056 lncRNA upstream 9272 33246212 ~ 33247575 (+) True XLOC_006118
TCONS_00013409 lncRNA upstream 151619 33104911 ~ 33105228 (+) True XLOC_006116
TCONS_00013634 lncRNA upstream 339921 32906643 ~ 32916926 (+) True XLOC_006112
TCONS_00013408 lncRNA upstream 1148375 32105265 ~ 32108472 (+) True XLOC_006103
TCONS_00013633 lncRNA upstream 1278363 31955220 ~ 31978484 (+) True XLOC_006102
TCONS_00013635 lncRNA downstream 455477 33715276 ~ 33968528 (+) True XLOC_006132
TCONS_00012079 lncRNA downstream 1435927 34695726 ~ 34698270 (+) True XLOC_006134
TCONS_00013636 lncRNA downstream 1492375 34752174 ~ 34753090 (+) False XLOC_006135
TCONS_00013410 lncRNA downstream 1492375 34752174 ~ 34772595 (+) False XLOC_006135
TCONS_00013637 lncRNA downstream 1492375 34752174 ~ 34797693 (+) False XLOC_006135
TCONS_00012051 mRNA upstream 5090 33246175 ~ 33251757 (+) False XLOC_006118
TCONS_00012054 mRNA upstream 5090 33246203 ~ 33251757 (+) False XLOC_006118
TCONS_00012049 mRNA upstream 5207 33246150 ~ 33251640 (+) False XLOC_006118
TCONS_00012052 mRNA upstream 5923 33246180 ~ 33250924 (+) False XLOC_006118
TCONS_00012050 mRNA upstream 8132 33246170 ~ 33248715 (+) False XLOC_006118
TCONS_00012058 mRNA downstream 8858 33268657 ~ 33281310 (+) True XLOC_006120
TCONS_00012059 mRNA downstream 22296 33282095 ~ 33293654 (+) True XLOC_006121
TCONS_00012060 mRNA downstream 38539 33298338 ~ 33301986 (+) False XLOC_006122
TCONS_00012061 mRNA downstream 38597 33298396 ~ 33300914 (+) True XLOC_006122
TCONS_00012062 mRNA downstream 44388 33304187 ~ 33314758 (+) False XLOC_006123
TCONS_00012045 other upstream 272078 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012044 other upstream 410238 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012037 other upstream 864348 32392383 ~ 32392499 (+) True XLOC_006105
TCONS_00012034 other upstream 1479321 31769821 ~ 31777526 (+) True XLOC_006100
TCONS_00011984 other upstream 2420071 30836656 ~ 30836776 (+) True XLOC_006071
TCONS_00012076 other downstream 1166449 34426248 ~ 34426365 (+) True XLOC_006133
TCONS_00012081 other downstream 1623447 34883246 ~ 34883370 (+) True XLOC_006136
TCONS_00012082 other downstream 1709720 34969519 ~ 34969645 (+) True XLOC_006137
TCONS_00012108 other downstream 3332395 36592194 ~ 36606932 (+) False XLOC_006151
TCONS_00012134 other downstream 4414379 37674178 ~ 37674294 (+) True XLOC_006162

Expression Profile

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