RNA id: TCONS_00012061


Basic Information

Item Value
RNA id TCONS_00012061
length 839
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_006122
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33298338 ~ 33301986 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCACAAACAAACAGCGGCGCTATGAACGAACAGAAATGGATTCAGACGTTAACTCAGTTTCAGGCTCACTGTCGTGGTTGTGTGATGAGAAGAGGACTGAGTTTGGTTCAGGCTCAGTTTGAGGACATTGTGCAAGAAATTGATGGAGGATTGGATCACCTGCAGTGGAGAGGAAACATTATTCCCAGACCTCACTTCACTGACACGGAAAGCCTGCTGCTGCGGTATGAACGCTCTAGGATTCAGTGCCATGACCTTTTGGATCGCTCAGAGAAGGAACAGAATGAGGAATGTGAGAAATGTCTCCCACAGTCTGACATCCATGTACCAGAGAAAGACGAAGCTCCTGAAGCAGCCAGAAGTGAAACTTCCACACATGTGGATGATGTTGAGGATAAAAGAGGAGACATCATGGTCATTCAAAACCTGATGGATGATTGCTCTACACTTTGCAGTGATCTGAATTCTGATGTCAGACAGAGCAGTTTATTTCAGACAGcaGGACCAGGTTTGCATACACTTTTAAAAGACACAACACACACTCCTGAGTCTCTGAAGCAGCAGAGGAGCACTTTGGCCATGGAGCTGCTGTGGATTCAGCAAGCCATCAGTAGCAGAAAGAAAGTGAGAAAAGTTGATATGCTCTTATCAATATTTGCTAATGTTTATCTAATATTAGATGTCCCATTTCACTTTCTACatcaaaataaatttacaaaatggAATGTGTATATATAACTGTATGAAATTTTACACCATAACTAtatcaaaactaaattttagaGTTGTAATATGTATAAGTAAAAACCTTGGACAACTTTAAAgtacttttttatt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-325 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IQCC (IQ motif containing C).

Ensembl:

ensembl_id ENSDART00000143895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012056 lncRNA upstream 50821 33246212 ~ 33247575 (+) True XLOC_006118
TCONS_00013409 lncRNA upstream 193168 33104911 ~ 33105228 (+) True XLOC_006116
TCONS_00013634 lncRNA upstream 381470 32906643 ~ 32916926 (+) True XLOC_006112
TCONS_00013408 lncRNA upstream 1189924 32105265 ~ 32108472 (+) True XLOC_006103
TCONS_00013633 lncRNA upstream 1319912 31955220 ~ 31978484 (+) True XLOC_006102
TCONS_00013635 lncRNA downstream 414362 33715276 ~ 33968528 (+) True XLOC_006132
TCONS_00012079 lncRNA downstream 1394812 34695726 ~ 34698270 (+) True XLOC_006134
TCONS_00013636 lncRNA downstream 1451260 34752174 ~ 34753090 (+) False XLOC_006135
TCONS_00013410 lncRNA downstream 1451260 34752174 ~ 34772595 (+) False XLOC_006135
TCONS_00013637 lncRNA downstream 1451260 34752174 ~ 34797693 (+) False XLOC_006135
TCONS_00012059 mRNA upstream 4742 33282095 ~ 33293654 (+) True XLOC_006121
TCONS_00012058 mRNA upstream 17086 33268657 ~ 33281310 (+) True XLOC_006120
TCONS_00012057 mRNA upstream 38597 33256847 ~ 33259799 (+) True XLOC_006119
TCONS_00012054 mRNA upstream 46639 33246203 ~ 33251757 (+) False XLOC_006118
TCONS_00012062 mRNA downstream 3273 33304187 ~ 33314758 (+) False XLOC_006123
TCONS_00012063 mRNA downstream 3279 33304193 ~ 33308314 (+) True XLOC_006123
TCONS_00012064 mRNA downstream 67226 33368140 ~ 33449639 (+) False XLOC_006124
TCONS_00012065 mRNA downstream 67589 33368503 ~ 33376087 (+) False XLOC_006124
TCONS_00012066 mRNA downstream 72799 33373713 ~ 33447118 (+) True XLOC_006124
TCONS_00012045 other upstream 313627 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012044 other upstream 451787 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012037 other upstream 905897 32392383 ~ 32392499 (+) True XLOC_006105
TCONS_00012034 other upstream 1520870 31769821 ~ 31777526 (+) True XLOC_006100
TCONS_00011984 other upstream 2461620 30836656 ~ 30836776 (+) True XLOC_006071
TCONS_00012076 other downstream 1125334 34426248 ~ 34426365 (+) True XLOC_006133
TCONS_00012081 other downstream 1582332 34883246 ~ 34883370 (+) True XLOC_006136
TCONS_00012082 other downstream 1668605 34969519 ~ 34969645 (+) True XLOC_006137
TCONS_00012108 other downstream 3291280 36592194 ~ 36606932 (+) False XLOC_006151
TCONS_00012134 other downstream 4373264 37674178 ~ 37674294 (+) True XLOC_006162

Expression Profile

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