RNA id: TCONS_00013639


Basic Information

Item Value
RNA id TCONS_00013639
length 725
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id XLOC_006135
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 34752174 ~ 34984913 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAAATTCTTCTTACCTGTGTTGCTGCATTTTGAAGACATGTCACTCATTTTCAACGGGggaaagtgtaacggtcaatatggcgaatgaagccccgccttcttgcgtgcaggagccaatcatcgatcgctataggaTTCTTCGGGTGGGGGGAGATTCTCCACGTctcagaccagacAAAGCCAGAGCATGCTGACCAAAAgctgtttcaaagatggccgccacgTGAAATGACTTCAGAACTTGCATAACTATCTCCAATTGGTTAACCCTCTTCATGCCCATCCTCAAACGTTCTGTTTTAATCAGAATTGCTTTCAGAAGCTCAGCAACACAGATTTTCACACTTCCAGGAATGTGAGGCCGAGTTGGAGTGGCACACAGTTGGTCTGGCAGTTTGAAAGGGTGGATGAGCAGATCATGGGGCCCCTTTACTGACGGTCAATGCTTAGACAGATGTTTTCTTGGAGCTGCACATTGCTGTATTGGTAGCAGCCGAGATGGAAGGCGCTTTGACATCTGTTCTCCAGACAGACTGGACCCTCTGACACTCAAAATGGAGGTAAACTGATGGAGAGAGGCCCGTCCTGTTGCCTGTGTTTATGCTGAAATCCGGGCCCATCCCTGATTGTTTTCCTACAAACGACAAGGAATTGTTTCACAAGTAGGGTGGTTTTAATCTTTATAGTCAGTAATTAAAGTTCTTTACCTACCTTAAAGAGGTG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012079 lncRNA upstream 53904 34695726 ~ 34698270 (+) True XLOC_006134
TCONS_00013635 lncRNA upstream 783646 33715276 ~ 33968528 (+) True XLOC_006132
TCONS_00012056 lncRNA upstream 1504599 33246212 ~ 33247575 (+) True XLOC_006118
TCONS_00013409 lncRNA upstream 1646946 33104911 ~ 33105228 (+) True XLOC_006116
TCONS_00013634 lncRNA upstream 1835248 32906643 ~ 32916926 (+) True XLOC_006112
TCONS_00013641 lncRNA downstream 64277 34862410 ~ 34984913 (+) True XLOC_006135
TCONS_00012086 lncRNA downstream 685485 35483618 ~ 35522176 (+) True XLOC_006140
TCONS_00013642 lncRNA downstream 1191022 35989155 ~ 35995167 (+) False XLOC_006149
TCONS_00013643 lncRNA downstream 1191623 35989756 ~ 35995167 (+) False XLOC_006149
TCONS_00013644 lncRNA downstream 1192098 35990231 ~ 35995167 (+) False XLOC_006149
TCONS_00012077 mRNA upstream 1875 34689663 ~ 34750299 (+) False XLOC_006134
TCONS_00012078 mRNA upstream 6421 34690158 ~ 34745753 (+) False XLOC_006134
TCONS_00012075 mRNA upstream 193253 33703784 ~ 34558921 (+) False XLOC_006132
TCONS_00012074 mRNA upstream 1056878 33689740 ~ 33695296 (+) True XLOC_006131
TCONS_00012073 mRNA upstream 1061494 33688474 ~ 33690680 (+) False XLOC_006131
TCONS_00012083 mRNA downstream 541049 35339182 ~ 35390095 (+) True XLOC_006138
TCONS_00012084 mRNA downstream 674670 35472803 ~ 35481843 (+) False XLOC_006139
TCONS_00012085 mRNA downstream 676102 35474235 ~ 35481790 (+) True XLOC_006139
TCONS_00012087 mRNA downstream 730474 35528607 ~ 35538624 (+) False XLOC_006141
TCONS_00012088 mRNA downstream 730474 35528607 ~ 35610118 (+) True XLOC_006141
TCONS_00012076 other upstream 325809 34426248 ~ 34426365 (+) True XLOC_006133
TCONS_00012045 other upstream 1767405 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012044 other upstream 1905565 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012037 other upstream 2359675 32392383 ~ 32392499 (+) True XLOC_006105
TCONS_00012034 other upstream 2974648 31769821 ~ 31777526 (+) True XLOC_006100
TCONS_00012081 other downstream 85113 34883246 ~ 34883370 (+) True XLOC_006136
TCONS_00012082 other downstream 171386 34969519 ~ 34969645 (+) True XLOC_006137
TCONS_00012108 other downstream 1794061 36592194 ~ 36606932 (+) False XLOC_006151
TCONS_00012134 other downstream 2876045 37674178 ~ 37674294 (+) True XLOC_006162
TCONS_00012135 other downstream 3352384 38150517 ~ 38150637 (+) True XLOC_006163