RNA id: TCONS_00001022


Basic Information

Item Value
RNA id TCONS_00001022
length 1914
RNA type mRNA
GC content 0.42
exon number 1
gene id XLOC_000590
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46652615 ~ 46654528 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGTCGCTTCTCCTTTTTCACAGGATTTCCTTCAAAAACAGAAGCTGAAACCTTAAGACTCCGATGCCCTGCAGAGGAATCAACCCTTCGTAAGCTCATCCAGGATCCAAAATGGGCGCCATCAAGTCCAAACGGTTTAAAAAGCCTCCTCAGGTGCTCATCATGGGCTTGGATTCAGCAGGAAAATCTACTTTAATGTACAGGCAGCTGCACGGGGTCATCATGCAGACCTCGCCCACCGTGGGCTTCAATGTGGCGACCCTCCAGCTGAACAAGAAGACCTCCCTGACCGTGTGGGACATTGGAGGGCAGGACACCATGAGGCCCAACTGGAAGTACTACCTGGAGGGATGCAAAGTGCTAGTGTTCGTGGTGGACAGCAGTGATTACGCCAGGATCGGAGAAGCTCAGAAAGCCCTCAAGAAGATCCTGCACGATGAGCATCTTAAAGGGGTTCCCCTGATGGTGCTGGCCAACAAAAAGGACCTGCCGAACACCATGACTATCAGAGAGGTGTCCACCAAGCTGGATTTGGACACTTACACGGATCGCCAATGGGAGATTCAAGCCTGCAGCGCTGTGAAGGGTCTGGGTCTCCAACAAGCCTTTCTGTCTATAGCTAAACTACTGCAGAAAGCATGAGGACTGGGAAATGTGACGCAGTTTAAACTTATTATAGTATATGTTAATGACACTTTATTCGTGTTATTAtacaggtaacactttaaaataaggctgttttagttaatgttacttggcaaacaatgaacaatatatttattatgtttgtttgttaaagaaaataaagagaTTTACTGTTCGTGTTAACTCGCAGTGCATTAACTATTGTCAACAAGCATGAACTTGGAATTTAAAGGACACCTAATTTTACCCTTTATAAGACGTAAggtaagcctttggtgtctctagaatgtgtctatAAAGTTTCTGCTGAAAATACCCATCACaatatttattatagcctccagaatctgcccattttggtgtctgaatacagtgtagctgtttttgtagcctgtggctttaaatgcaaatgagctgcttctccccgcccatcGTTTCCATGTGCGCATCTGCTTCTTTCGCCCCATGCACTCTGGACTTCAGCGTCAACgagtgtctgaagttggggctgacgtgatcaggcccggccctaaccaatttggcaccCTAGGCAAAATTTCAGGTGGcaccccgtcacatcgcagtaaattccaatgctagtgtatagtcataaatagctttttgatcgacaaCTACAAGcagggaaaacgtcagataaatatgccaatgcaattaatgttattgctgaatagatttaatatttacacatttgcatgAGGATGTAATGATGGGGGTATACATTATATTGAATAATAggaaccattttttattattttttgtctcttttcttttaatcaaacaattatttgtattggtcatgtaagtgtcatatattaactgaatttctaatgttgtgggtgagtgctgtgcatactaattagcatttttgcagaagtagatagatgcgggtccaaaattaaattcagctctgcagaaacttcctgtctgaagagaggtgttaaaactgaacacagaacacagaaaaatgtatactttgttgttgggcagagaattcatagaaaaagaggaagtatgccgAAGGGgcagccaatggaggactgaacaatgactgacaagtgacgttacaccaaaactccacctgttaagatcggtggtgtatatatgctgaagtcaggaaatatatgttagttgcgaacctcttgaatgtaattcttgtattgcattggggtaatgtaacccagagctctgtcatcgaattattcatttgtatccaataaattgttacgatttttgacattgaagaaaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-030131-3410 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARL11 (ADP ribosylation factor like GTPase 11).

Ensembl:

ensembl_id ENSDART00000053221

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002870 lncRNA upstream 345065 46307015 ~ 46307550 (+) True XLOC_000585
TCONS_00003131 lncRNA upstream 380289 46263451 ~ 46272326 (+) True XLOC_000584
TCONS_00001012 lncRNA upstream 400791 46249979 ~ 46251824 (+) True XLOC_000583
TCONS_00002869 lncRNA upstream 404024 46247618 ~ 46248591 (+) True XLOC_000582
TCONS_00002868 lncRNA upstream 433454 46217503 ~ 46219161 (+) True XLOC_000581
TCONS_00003133 lncRNA downstream 64568 46719096 ~ 46726957 (+) False XLOC_000591
TCONS_00003132 lncRNA downstream 64568 46719096 ~ 46726957 (+) False XLOC_000591
TCONS_00003134 lncRNA downstream 65020 46719548 ~ 46726957 (+) False XLOC_000591
TCONS_00003135 lncRNA downstream 65043 46719571 ~ 46726957 (+) False XLOC_000591
TCONS_00003136 lncRNA downstream 65079 46719607 ~ 46726957 (+) False XLOC_000591
TCONS_00001021 mRNA upstream 35332 46598764 ~ 46617283 (+) True XLOC_000589
TCONS_00001020 mRNA upstream 40566 46598502 ~ 46612049 (+) False XLOC_000589
TCONS_00001016 mRNA upstream 58327 46493944 ~ 46594288 (+) False XLOC_000588
TCONS_00001017 mRNA upstream 58716 46509176 ~ 46593899 (+) False XLOC_000588
TCONS_00001018 mRNA upstream 61978 46579885 ~ 46590637 (+) False XLOC_000588
TCONS_00001024 mRNA downstream 293482 46948010 ~ 46957351 (+) True XLOC_000594
TCONS_00001026 mRNA downstream 436940 47091468 ~ 47105214 (+) False XLOC_000596
TCONS_00001028 mRNA downstream 511314 47165842 ~ 47173177 (+) False XLOC_000598
TCONS_00001029 mRNA downstream 511460 47165988 ~ 47173403 (+) True XLOC_000598
TCONS_00001030 mRNA downstream 524001 47178529 ~ 47187878 (+) False XLOC_000599
TCONS_00001019 other upstream 66013 46582467 ~ 46586602 (+) True XLOC_000588
TCONS_00001013 other upstream 250979 46400612 ~ 46401636 (+) True XLOC_000586
TCONS_00000997 other upstream 884085 45768416 ~ 45768530 (+) True XLOC_000573
TCONS_00000982 other upstream 1481963 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000975 other upstream 1642999 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00001025 other downstream 434973 47089501 ~ 47095865 (+) False XLOC_000596
TCONS_00001027 other downstream 441297 47095825 ~ 47101796 (+) True XLOC_000596
TCONS_00001046 other downstream 1242741 47897269 ~ 47897385 (+) True XLOC_000608
TCONS_00001047 other downstream 1259567 47914095 ~ 47914209 (+) True XLOC_000609
TCONS_00001054 other downstream 2810213 49464741 ~ 49472325 (+) True XLOC_000620

Expression Profile

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