RNA id: TCONS_00012097


Basic Information

Item Value
RNA id TCONS_00012097
length 1867
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_006145
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35765317 ~ 35788217 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATTCCGCTCGGTGCCATCGCTGAAATCTGTCTCACAGGCTGAGCAGTGCAACTTAAAACATCAGCCACAATTCCAGATCCACATCTCTCTCTCATGCACTCTCTATAACCAGCTCCATATGATGAGACGCCTGCTCTACTCTTACTAACCACGACAGGGACAAAagGATTTTGTTGGGGGACTGGGGAAGTGAAGACCACATGATAAGGATGGGACTCCTGAAAGTGCTGAAAACTCAGTTGCTGTGCCATCTCATCATCTGTTATGTGTTTCTGGTCAGTGGAATCATCATCAACCTGCTGCAGCTTTGTACTCTACCTCTGTGGCCCATTAACAAGCAGCTCGCACGCAAGATCAACTGCAGACTGGGTTACTCCATCGCTAGTCAACTGGTGGCATTGTTGGAGTGGTGGTCTGGGACCGAATGCACACTTTACACAGATCCAGAAAGCTTTCGTCTATACGGCAAAGAAAATGCCATCGTTGTCCTCAATCATAACTTTGAGATTGATTTTATGACCGGTTGGACCTTTTGTGAGAGATTTGGTGTTCTAGggAGCTCGAAGGTGTTGGCGAAAAAGGAACTGTCCTTTGTTCCTGTGATTGGCTGGATGTGGTATTTCCTGGAGATTGTCTTCTGCAAAAGGAAATGGGAAGAGGATCGCAAGACAGTCGTGCAGAGTCTGCGCAACCTTCAAGATTACCCAGAATTCTTTTGGTTCCTTTTGCACTGTGAGGGCACACGATTCACGGAAAAGAAGCACAAGATCAGCATGGAGGTGGCAGAGAAGAAAGGTCTCCCCAAACTCAAGTACCACCTTCTACCTCGAACTAAGGGCTTTTGTGTTACGGTCCAGAACCTCAGGGGAAAGGTTACTGCTGTGTACGATTCTACGCTTAATTTCAGAAACAACGAAATGCCAACTTTACTAGGGGTGCTCAATGGAAAAAAGTACCACGCGGATTTATATGTGAGGCGGATTCCTCTGGACTCCATCCCAGAGGATGAGTCAGAATGTGCGGCCTGGCTACACAAACTCTACCAGGAGAAAGATGAATTCCAAGAGCATTACAGACAGACGGGTCGCTTTCCGGGTCCCATCACGAACCCTCCGCGTCGACTCTGGGCACTGGTAAACTGGCTGTTCTGGGTGTGTGTGCTGGTGTATCCCATCTGCGTGTTACTGCTGCAACTGCTGCTGTCAGGATCCACCTTCACCATCGTCTGCACTTTTGTCTTCTGTCTAGCAGTGTCAGCTGGGGTGCGCTGGATGATTGGACAGACCGAGATCGACAAGGGTTCGAACTATGGGGTTAAAGATGTGCAGATGAACAACAACTGAGAGACTGTGACCAACCAGCGCAACACGATCACATTATACTGTACTGGGGGCATTCGGACAACCAAACCACCTTTATAGTGAATTGAAGAACTCGGCACTACAGAAAGAATCATTTAAAATGGTTCaagtttaagctttttttttttttttttgctgaaaaaaacaaataggccatcatttaaaaaaacggtctgtttattaatattcttttttttaaatattgcaaacaCTGTTGGAGGAGCAGAGAACCAGCAGTTGATGCCTGCGCAGGAGCAATGTTTGTCCACCTGTTCGagtgcagcagcagcagaaagGCGGAGTCAGACTGGCCTCTTCCCTCTCATTGGTTGATTATGCTCTTGAACACCAGGATAAAGGCACGCCATCGGCCAGCGTGAGGCTGAGCCGACGCAGCACAACTACTTATAGGCTGAAATATGACTTGTTAACAGTGGGCTCTGCAGCAAGGCAAAACAAAAAtaccattttaacaaaaaaagaaaattaaaaacctTCTCAGTC

Function

GO:

id name namespace
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1924 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and mitochondrial outer membrane. Orthologous to human AGPAT4 (1-acylglycerol-3-phosphate O-acyltransferase 4).

Ensembl:

ensembl_id ENSDART00000100156

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012086 lncRNA upstream 243141 35483618 ~ 35522176 (+) True XLOC_006140
TCONS_00013640 lncRNA upstream 780404 34752174 ~ 34984913 (+) False XLOC_006135
TCONS_00013641 lncRNA upstream 780404 34862410 ~ 34984913 (+) True XLOC_006135
TCONS_00013638 lncRNA upstream 967184 34752174 ~ 34798133 (+) False XLOC_006135
TCONS_00013642 lncRNA downstream 200938 35989155 ~ 35995167 (+) False XLOC_006149
TCONS_00013643 lncRNA downstream 201539 35989756 ~ 35995167 (+) False XLOC_006149
TCONS_00013644 lncRNA downstream 202014 35990231 ~ 35995167 (+) False XLOC_006149
TCONS_00013645 lncRNA downstream 202140 35990357 ~ 35995167 (+) True XLOC_006149
TCONS_00012107 lncRNA downstream 797399 36585616 ~ 36592453 (+) False XLOC_006151
TCONS_00012095 mRNA upstream 16641 35745572 ~ 35748676 (+) False XLOC_006144
TCONS_00012096 mRNA upstream 17225 35746440 ~ 35748092 (+) True XLOC_006144
TCONS_00012092 mRNA upstream 20354 35689749 ~ 35744963 (+) False XLOC_006143
TCONS_00012094 mRNA upstream 23706 35690023 ~ 35741611 (+) False XLOC_006143
TCONS_00012093 mRNA upstream 23706 35690023 ~ 35741611 (+) True XLOC_006143
TCONS_00012099 mRNA downstream 68246 35856463 ~ 35862196 (+) False XLOC_006146
TCONS_00012100 mRNA downstream 68282 35856499 ~ 35872596 (+) True XLOC_006146
TCONS_00012101 mRNA downstream 137273 35925490 ~ 35953596 (+) True XLOC_006147
TCONS_00012102 mRNA downstream 167345 35955562 ~ 35961435 (+) True XLOC_006148
TCONS_00012103 mRNA downstream 356124 36144341 ~ 36151182 (+) False XLOC_006150
TCONS_00012082 other upstream 795672 34969519 ~ 34969645 (+) True XLOC_006137
TCONS_00012081 other upstream 881947 34883246 ~ 34883370 (+) True XLOC_006136
TCONS_00012076 other upstream 1338952 34426248 ~ 34426365 (+) True XLOC_006133
TCONS_00012045 other upstream 2780548 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012044 other upstream 2918708 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012108 other downstream 803977 36592194 ~ 36606932 (+) False XLOC_006151
TCONS_00012134 other downstream 1885961 37674178 ~ 37674294 (+) True XLOC_006162
TCONS_00012135 other downstream 2362300 38150517 ~ 38150637 (+) True XLOC_006163
TCONS_00012137 other downstream 2437940 38226157 ~ 38277981 (+) False XLOC_006165
TCONS_00012159 other downstream 4181132 39969349 ~ 39969465 (+) True XLOC_006177

Expression Profile

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