RNA id: TCONS_00012099


Basic Information

Item Value
RNA id TCONS_00012099
length 626
RNA type mRNA
GC content 0.50
exon number 2
gene id XLOC_006146
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35856463 ~ 35872596 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATTCGGAGCAGCTCGAGCATTAAAACGCATCTGACCCGCATCCAGAGCCCACATCAGCACCCTCGGGTCTAGTAGCCGAGCTCAAGATGCTTCAGTCCCTCGCCGGTAATTCGTGCGTGCGCCTGATACAGAGCAACAAATCGGCGTGGTATTTTCTTTTCCTGGTGCTCGGCTACGTGCTGTATCTGATCTTCGGTGCGGTGGTGTTTTCCTCGGTGGAGCTGCCGTATGAAGACGACCTTCGCCAGCAGCTCAGAGAGATAAAGAGACTTTTCCTCCAGGAGCACCAGTGTCTGTCCGAGGAGCGGCTCGAGAGGTTTCTGTCCAAAGCCCTGGAGGCCAGCAATTATGGGGTGTCTATTCTCAACAACGCCTCGGCTAGCTGGAACTGGGACTTCACCTCGTCTTTGTTTTTTGCGAGCACCGTCTTATCGACCACAGttggtTTACACTCTGATCTAGAAAACACAACCACGATAACACATCGTTCCATCAAAGCTCAATTACCACTGGATTTGTTGGAGATGTGTGAACTGGCCAGTGCAAGTAAAATTGCTGTCGAAATTTACCAAGGCAGACAGATTTGTAACTTTTATATAAATAACACTGACATGTAATACCTTG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0003015 heart process biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0030322 stabilization of membrane potential biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022841 potassium ion leak channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-78 Enables potassium channel activity. Acts upstream of or within heart process. Predicted to be located in several cellular components, including perikaryon; recycling endosome; and synaptic membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and heart. Orthologous to human KCNK1 (potassium two pore domain channel subfamily K member 1).

Ensembl:

ensembl_id ENSDART00000171056

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012086 lncRNA upstream 334287 35483618 ~ 35522176 (+) True XLOC_006140
TCONS_00013640 lncRNA upstream 871550 34752174 ~ 34984913 (+) False XLOC_006135
TCONS_00013641 lncRNA upstream 871550 34862410 ~ 34984913 (+) True XLOC_006135
TCONS_00013638 lncRNA upstream 1058330 34752174 ~ 34798133 (+) False XLOC_006135
TCONS_00013642 lncRNA downstream 126959 35989155 ~ 35995167 (+) False XLOC_006149
TCONS_00013643 lncRNA downstream 127560 35989756 ~ 35995167 (+) False XLOC_006149
TCONS_00013644 lncRNA downstream 128035 35990231 ~ 35995167 (+) False XLOC_006149
TCONS_00013645 lncRNA downstream 128161 35990357 ~ 35995167 (+) True XLOC_006149
TCONS_00012107 lncRNA downstream 723420 36585616 ~ 36592453 (+) False XLOC_006151
TCONS_00012097 mRNA upstream 68246 35765317 ~ 35788217 (+) False XLOC_006145
TCONS_00012098 mRNA upstream 73437 35765368 ~ 35783026 (+) True XLOC_006145
TCONS_00012095 mRNA upstream 107787 35745572 ~ 35748676 (+) False XLOC_006144
TCONS_00012096 mRNA upstream 108371 35746440 ~ 35748092 (+) True XLOC_006144
TCONS_00012092 mRNA upstream 111500 35689749 ~ 35744963 (+) False XLOC_006143
TCONS_00012101 mRNA downstream 63294 35925490 ~ 35953596 (+) True XLOC_006147
TCONS_00012102 mRNA downstream 93366 35955562 ~ 35961435 (+) True XLOC_006148
TCONS_00012103 mRNA downstream 282145 36144341 ~ 36151182 (+) False XLOC_006150
TCONS_00012104 mRNA downstream 282192 36144388 ~ 36151182 (+) False XLOC_006150
TCONS_00012105 mRNA downstream 284219 36146415 ~ 36153572 (+) True XLOC_006150
TCONS_00012082 other upstream 886818 34969519 ~ 34969645 (+) True XLOC_006137
TCONS_00012081 other upstream 973093 34883246 ~ 34883370 (+) True XLOC_006136
TCONS_00012076 other upstream 1430098 34426248 ~ 34426365 (+) True XLOC_006133
TCONS_00012045 other upstream 2871694 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012044 other upstream 3009854 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012108 other downstream 729998 36592194 ~ 36606932 (+) False XLOC_006151
TCONS_00012134 other downstream 1811982 37674178 ~ 37674294 (+) True XLOC_006162
TCONS_00012135 other downstream 2288321 38150517 ~ 38150637 (+) True XLOC_006163
TCONS_00012137 other downstream 2363961 38226157 ~ 38277981 (+) False XLOC_006165
TCONS_00012159 other downstream 4107153 39969349 ~ 39969465 (+) True XLOC_006177

Expression Profile

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