RNA id: TCONS_00013653


Basic Information

Item Value
RNA id TCONS_00013653
length 4990
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_006160
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37538653 ~ 37544321 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaatatatgcatttttcttcaaaaacacatgcaaaacgcagcattgatttttaaaacattaatgtcCATGCTTCTGTAATCTTCATTCTCCATGCTAATTTCtagttataaataaaaatctcaTATAGGTTTGACTCGATCAGGCACTTTATATCTGCATAAAGCATTACAGGCATGCATTATAAAAGAGTCTGGGTTTTAATGTCACATGGACGGTGTAAAGATTGTCTGAAAAAGATGCATGCCTATAGGTGCTTACACACAACGACAGTGTATTAAATACTAAATAGTTATTTCCTTTGCATTGTCCAAATTATTTCCATTCACACGGAGCCACAAAAAAACTATTACAAAAGCCAGGCCCAGTAGTTGGCGCGGTGGTcaatgtgtaaaaatatattacGAGCATGTGCACGTCTATCCAGTAGCCTAAAATTGTTGAAATGGTTGTCAAATACTTGTGCATGCCAATAGACTGAACATGTTATACATGTATGCATGAATGCACCGGTGGAAAATTAACAAAAAGTTTCTGTTTTTAGTTGAAAAATGCACTAAAGAGCCAATCACACCAAGCTTAAAAACtataaatgtaaagtaaatataTTTGCGTCCACACATACGAAAGATTACGATTCATTAATTGttaatttagttagtttttttaagCACTACCCCGTATAATCAGCAAATATCCTCAGTGTGCTACTTTTCTAgcacatctgaccagtgaatccagctcatgtaatgtaatcaaacaaacagacttatgcctagttcagactgcgtgattttagccccgattttggctcggcgacaggttttgagaaatcgccgacaaatgcctgaaatcacaggcaaatcgctgctcgtgcacgtgagtgacaatcacacagtatgaactatcaaagacgcgatctgagagaatcgccgatgagtcgccgatgcccgtgagatatttggcgtgttaaatatctggagctgtcggcgattcaaatcatgccgtgtgaattgagttttgactgaaaataacatcagccatcgccaacagccaatgagagagcagctttcacttgtgtgtgcgtgtgtgtatacctgctgcaggccagcgggaggctgggggagaagttaaaagcgctcattttcggtttattttggacccacgaaatggaggaaaaactagtggaggtttgacaggactcaggagcaaccgtgtctgtttgacgtttcatacagaaagaaattagtttattatcaacgttgaggagaaatggctaattccctttaaacccaggtgagcaaacatgtacatgtcctgccccattaaaggcttctttctcattatgtagttaataacaaaagatataccacTTGTTTTTGGCTgagagacgtagtttggacgaagttgtcggcgattcttcctatagtaaagtcatgcaatgtaaatgtccctgtcgccaatccatcttgctgtgtaaacaaagcagtgacgaaacgcaagcccagatagtcatgcagtgtgaaaacatctgtgacttgagtactttgaaaatcatgcagtctgatctCGGCattaggctacgttcacactgccaggcttagtgctcaaatctgattttttttctcagatctgattttttggcatggctgttcacactgctcataacagatttgcagtgtgaacaggTCATGGTCCTAATCTGACCCGCATGCGcagaagtacacacacacactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcacattcattcattcattcattcattcattcattcattttcctttggcttagtcccaaaaatatccagcatatgatttacagaGCAGatatgtgggggaaaccagagcatctggaggaaactcaagcaaacatggggagaacatgcacactccagaaagaaatgccaactggccaagccgggactcgaaccagcgactttcttgctgtgaggtgacaggactaaccactgagccaccatgttgcctatTTAATCATGTTGCACACcccaatttataataatttttagaactctattattattttaagttatcATGCTTGGTGTGAACAGCTCTTTACTTTCTGTCCTTTGTGTAAGAGACAGCGTTTGCTAGGTAGGATTGGTTTTTCCACCCAACTGCAACGAATAATGACAGGAGTTTTCAAGCTTCAAAACAGATTCACAATCCCACATAAATTGACTTTTACACCACTGTATGAGTCATCTAAAGCAATTTAACAGCTTGTGGGAAAAGACGAAATTCATTCAGTGATTATCTTCAGTTGTCTCTTAGGCATGTGTTCAGATCATAGAGCCATTGGTTGTGTCCTAATTCAGAGACCGCATCCTTCAAAGCTGATTGTATTACCGCGACATGACAAAAGACGTCCCAATTTGAAGCTTTCTTCAAATGCAGCCTTGAACTGAGTCCTGCGTTTTGGGTTGCTAGGTGACAATATCAGTCCTGTGTTCCTATTAAACAATGTTCCATTTAGGCTCCACATCCTAGGAAGGATGCAACCTCTGAACTGGGATGCTCATATTGATTCAGGTGAAACTGAGAACCAGATCAGTCCATTCAAATTGGTTCAAATGGTTCAAATGGTTTAGATATCTGAAGCTGATTAAAAGAAGATTCAGCTAGTGAATGACTTAGGGGCCCGATCAGACCGAACAcgcttttacatttaaaaaaaaagctcacAAAAGCTCACACTTCTGACTTTTTCTGAGAaatatttctcacaattctgactttttctgagaaatatttttcacaattctgactttttctgaggaatatttcttacaattctgacTTTTTCTGAGAAATatttctcataattctgactttttctgaggattatttcttacaattctgacattttaaggaatatttctcacaattctgactttttcggAGGAATATTtcttacaattctgactttttctgaGAAATATttgtcacaattctgactttttctgagaaatatttctcacaattctgactttttctgaggaatatttcttacaattctgacattttgaggaatatttctcacaattctgactttttcggaggaatattttttacaattctgactttttctgagaaatatttctcacaattctgactttttcggaggaatattttttacaattctgactttttctgaggaatatttcttacaattctgactttttgaggaatatttctcacaattctgactttttcggAGGAATATTTCTTACAATTCCGACTTTTTCTGAGAAATatttctcataattctgactttttctgaggaatatttctcacaattctgatttTTGTAAAGGAATATTTCTCATAATTCTCCTTTCTAAATGTTTGCAAATATAAACTCATGAGGTCCCAAATTTCAAAAAAGTGTAGGAAATTGTGAGCTTGATATTATGAGAAGTAATAATCGTGTCATTGAAACTTGCAACTGAGACacaacatctttttttttgctatcaTGGAAGACAATTTTTTTGTACAGTCTAATAATATGATATGAATGGTGATCAATTGTGCACCCTTTTTAATACCGATATATACCAAACCTAACTTCTATTATAACACTGTCCTTGACTACAAATCGCAGCATATTCGGATGTAAAATGTAATagaaatgtaataaaaagtaacAGCTTTCGTGTCATCAgtagaatgaatgaaagaaagagcaCATTTTCCACTAAACATGGCCTTGGTGTGGCTGTGAGTCTTAAAACTTGAGGCTTAACATCATCTGAAGAAAGACATTTCTCCATTCATGAACTCGCTAGGCGACAATTACCGTGGCTGGAGCAGTAATGCATTTTGATTGGCTGCTGCTGAAGTTTTAAAGAGTATGTCACGATATGAGATCATTGATAAGAGGCTGTATTAAGTGCTCTCAGACAGTGTCACGTGGGTGTTTGTATGTGCTTTCACAATTACATGCCTTATCTTTGTTTGATGCTGTAAAAAGTTGCTTGCTCACTCTGGTTTATCTGGGTATTTTTGGCCTTGGCCGTCTTCTCCCTCCCAAAGGAATATCCAGCTGAATGCAGTGAGGTAAGAGTGATTGTATTTCTCTCTAAGCATCCAGCAGCGTGTGCCAGCGGCAGACCTGTTGGTTTCCGCTCTCCTTCATGTCCTGCCAGTGAAGAAGCTCCTCTTCACCGCTGCTGTTCTGGCCCAGAGCCACCCAGCCTATCATCTCCTTACGCTTCATGTTCCGCCGATTGTAAATGGAGACCATTAACGTGACGTCAGACAGTTGGAAAAGCGCCACCTGGAAGACGAACGTCTCCTTGAAGACAGGATTGGGCTGGCTGCGACGGATCGACGTCTTACAGCGGGAAATCTCCTGTCCCATTGAGTTCAACAGAGTGAGCTTACCAAATGTATCTGAAAGAGAGAGTCAGGTCAATTAAGGCGTTtcagacatttacatttattcatttagcagatgcgtATAtcaaagtctgcatgaactggaagctgtgacttttttttcgtattgtgatgcAATTCCTAGAgaagctgaatattaaatgaggcaacagtgggcgtggcttgtttttttctactgcaagttgattggatgtagtaaagttggcattttattcagaaatatTGTGAAAACAGTGTCtactacaggtggtttatcaagcccacttACTTGTGTGGAGCACACTCATTATTGCACAATGTTTTTCAAGAAATAGTTGGTGTTTATAAGGTGTCTGGGGCATATGGAGAGGAAATTAGTGTCtactacatgtggtttgtcaagcccactcacctgtgtggagcacactcagaattgcacaatgttttccaaGAAGTATTTGCCTTTTTTAAGGTGTCTAGGCAGATGGAGATGGAAAaaagtgtgtcctacaggtggtttgtcaa

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006996 organelle organization biological_process
GO:0051225 spindle assembly biological_process
GO:0007017 microtubule-based process biological_process
GO:0048285 organelle fission biological_process
GO:0043414 macromolecule methylation biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0007059 chromosome segregation biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0032259 methylation biological_process
GO:0006281 DNA repair biological_process
GO:0000280 nuclear division biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0015631 tubulin binding molecular_function
GO:0140097 catalytic activity, acting on DNA molecular_function
GO:0008017 microtubule binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012127 lncRNA upstream 471499 37065148 ~ 37067489 (+) True XLOC_006158
TCONS_00012126 lncRNA upstream 475654 37055570 ~ 37063334 (+) False XLOC_006158
TCONS_00013646 lncRNA upstream 932056 36585616 ~ 36606932 (+) False XLOC_006151
TCONS_00012110 lncRNA upstream 939966 36595640 ~ 36599022 (+) True XLOC_006151
TCONS_00012107 lncRNA upstream 946535 36585616 ~ 36592453 (+) False XLOC_006151
TCONS_00013657 lncRNA downstream 681755 38226076 ~ 38283726 (+) False XLOC_006165
TCONS_00013658 lncRNA downstream 681755 38226076 ~ 38284199 (+) False XLOC_006165
TCONS_00012158 lncRNA downstream 2140150 39684471 ~ 39727464 (+) False XLOC_006175
TCONS_00013659 lncRNA downstream 2166954 39711275 ~ 39727464 (+) True XLOC_006175
TCONS_00013660 lncRNA downstream 2300943 39845264 ~ 39873628 (+) False XLOC_006176
TCONS_00012128 mRNA upstream 249879 37273010 ~ 37289109 (+) False XLOC_006159
TCONS_00012129 mRNA upstream 249957 37273221 ~ 37289031 (+) True XLOC_006159
TCONS_00012123 mRNA upstream 466430 37022601 ~ 37072558 (+) False XLOC_006158
TCONS_00012125 mRNA upstream 466432 37040789 ~ 37072556 (+) False XLOC_006158
TCONS_00012124 mRNA upstream 466644 37022632 ~ 37072344 (+) False XLOC_006158
TCONS_00012130 mRNA downstream 109530 37653851 ~ 37658663 (+) False XLOC_006161
TCONS_00012131 mRNA downstream 109568 37653889 ~ 37659244 (+) False XLOC_006161
TCONS_00012132 mRNA downstream 109612 37653933 ~ 37673576 (+) False XLOC_006161
TCONS_00012133 mRNA downstream 111957 37656278 ~ 37673020 (+) True XLOC_006161
TCONS_00012136 mRNA downstream 669373 38213694 ~ 38222714 (+) True XLOC_006164
TCONS_00012108 other upstream 932056 36592194 ~ 36606932 (+) False XLOC_006151
TCONS_00012082 other upstream 2569343 34969519 ~ 34969645 (+) True XLOC_006137
TCONS_00012081 other upstream 2655618 34883246 ~ 34883370 (+) True XLOC_006136
TCONS_00012076 other upstream 3112623 34426248 ~ 34426365 (+) True XLOC_006133
TCONS_00012045 other upstream 4554219 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012134 other downstream 129857 37674178 ~ 37674294 (+) True XLOC_006162
TCONS_00012135 other downstream 606196 38150517 ~ 38150637 (+) True XLOC_006163
TCONS_00012137 other downstream 681836 38226157 ~ 38277981 (+) False XLOC_006165
TCONS_00012159 other downstream 2425028 39969349 ~ 39969465 (+) True XLOC_006177
TCONS_00012162 other downstream 2783241 40327562 ~ 40328237 (+) True XLOC_006179