RNA id: TCONS_00013659


Basic Information

Item Value
RNA id TCONS_00013659
length 693
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_006175
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 39684471 ~ 39727464 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGACAGCTGCCTAGCCGATGAATAAACCTGAGGCTGAACCGGAGAATGAGGAGCAGAGGACTGTGGAGCTGCGCATGATGTGCAAAGACAGATGCTGTTGATGAAGCCTGAAGCAAAAGATGGATTTGGAGGAGCCGGAGTGACATGAAGAGCAGAAAGAGACGGGGTCTGGGCAGGTAAAAAACACTATCTCAAGGGCAACTCCTTCACATCCGCTCCGTCTGTCAGCACAGATCTTCGTCTCGTGAGTTTTCCACAGCGAGTGGCACTCTGCATTTTCCTGAAGGTTACTTTTGACTCTGATCTCACCTGAAACCTCCCGTCTACCACTTATTCTTAGCATTTGTGGAAAAAGTCCTTTAATGTTGCTCTGCTGATACTTTATCTTCTTCAGAAATGATTAATGTTTTAGAAAAATGCAGAAGTGCAAGATCCCTGTTCTTAAGGCTTCCATAAATGggactaaataaaatattactcaTTCTTTAATGGATTTTTTTGTCCATTTCAGTGCACATTAGATCAAAAATCAGCataccaaaaacaaaataatacaaattgttGATGTGTTACTTTACTTGAAGTTTCTTCTAGAGGTAACTTGAAATTAGAACATTTAACTTTTGAGTGTTATGTTTTATAGACTCCACATTATTAGAACCCACTGTTGATAAACATGGATAGACATGTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013658 lncRNA upstream 1427076 38226076 ~ 38284199 (+) False XLOC_006165
TCONS_00013657 lncRNA upstream 1427549 38226076 ~ 38283726 (+) False XLOC_006165
TCONS_00013654 lncRNA upstream 2166954 37538988 ~ 37544321 (+) False XLOC_006160
TCONS_00013660 lncRNA downstream 117800 39845264 ~ 39873628 (+) False XLOC_006176
TCONS_00013661 lncRNA downstream 117801 39845265 ~ 39846714 (+) True XLOC_006176
TCONS_00013411 lncRNA downstream 600096 40327560 ~ 40330374 (+) False XLOC_006179
TCONS_00013662 lncRNA downstream 622404 40349868 ~ 40352308 (+) True XLOC_006180
TCONS_00013663 lncRNA downstream 632696 40360160 ~ 40419304 (+) False XLOC_006181
TCONS_00012157 mRNA upstream 177910 39532050 ~ 39533365 (+) True XLOC_006174
TCONS_00012156 mRNA upstream 374092 39324865 ~ 39337183 (+) True XLOC_006173
TCONS_00012155 mRNA upstream 388149 39315881 ~ 39323126 (+) True XLOC_006172
TCONS_00012154 mRNA upstream 398760 39297802 ~ 39312515 (+) False XLOC_006172
TCONS_00012153 mRNA upstream 418775 39282477 ~ 39292500 (+) False XLOC_006172
TCONS_00012160 mRNA downstream 291537 40019001 ~ 40061830 (+) False XLOC_006178
TCONS_00012161 mRNA downstream 306712 40034176 ~ 40056501 (+) True XLOC_006178
TCONS_00012163 mRNA downstream 607263 40334727 ~ 40354313 (+) False XLOC_006180
TCONS_00012165 mRNA downstream 710086 40437550 ~ 40445352 (+) False XLOC_006182
TCONS_00012166 mRNA downstream 710086 40437550 ~ 40456995 (+) False XLOC_006182
TCONS_00012137 other upstream 1433294 38226157 ~ 38277981 (+) False XLOC_006165
TCONS_00012135 other upstream 1560638 38150517 ~ 38150637 (+) True XLOC_006163
TCONS_00012134 other upstream 2036981 37674178 ~ 37674294 (+) True XLOC_006162
TCONS_00012108 other upstream 3104343 36592194 ~ 36606932 (+) False XLOC_006151
TCONS_00012082 other upstream 4741630 34969519 ~ 34969645 (+) True XLOC_006137
TCONS_00012159 other downstream 241885 39969349 ~ 39969465 (+) True XLOC_006177
TCONS_00012162 other downstream 600098 40327562 ~ 40328237 (+) True XLOC_006179
TCONS_00012184 other downstream 2283821 42011285 ~ 42018948 (+) False XLOC_006196
TCONS_00012186 other downstream 2314762 42042226 ~ 42042342 (+) True XLOC_006197
TCONS_00012203 other downstream 3912495 43639959 ~ 43656324 (+) False XLOC_006211

Expression Profile

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