RNA id: TCONS_00012524


Basic Information

Item Value
RNA id TCONS_00012524
length 640
lncRNA type retained_intron
GC content 0.38
exon number 5
gene id XLOC_006453
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 9339919 ~ 9368535 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttttttttctattaaagttCCAGAACTGGACCACTTTGCAGCTCAGTTTCCTGGATATGAAGATTCATCTGatgaggattattattattatgatgacgATAAATACAGTAGTCATACAAATAACAGATACTGTGGCTTTTCACGCAACTTCCTAGACAGAGGTCTACCAAAACCAATAACAGCTGAGGAAGCGGAAAGAAATGCAAAAGAGCTAGTGGATGAGGaagaaaaaattaagaaaaaagcagagaagaaaaaaatgaaaaaaatgAGACAAAAAGAGAGACGTCGCCTGGAAAAATTAGAGaaagaaaatgcaaataaagaaaaaaataaaccgGTACAAGTTGACCCTGGACCAGAAAAGACCAAACATGCAGATAAAGATAatgaaaataaagataaaaaatgtaaaaataaaggttGTTCATCTGTGCCTCCTGACCCTCAGCCCATTTCAGCCCCCGTGTCGAGCAGTGATAGCAGTAGTGATGAGGAAGACGATAAAAAGGAAGATTCTGCAATAGAACCAGAGGAGCTCGACATGAATAGCTGCTTTGTGTCAAACGCAGCTGCTATTGCCAAACGCAAACTGGAACAGAAACCTAAACCTGACAAGAAGCCTGCTCAAGCAAACCC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2527 Predicted to enable RNA binding activity and metal ion binding activity. Orthologous to human TTC31 (tetratricopeptide repeat domain 31).

Ensembl:

ensembl_id ENSDART00000143653

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012516 lncRNA downstream 64404 9288840 ~ 9291685 (-) False XLOC_006449
TCONS_00012518 lncRNA downstream 64521 9288840 ~ 9291568 (-) False XLOC_006449
TCONS_00013463 lncRNA downstream 339863 9009035 ~ 9016226 (-) False XLOC_006442
TCONS_00013751 lncRNA downstream 349492 9002682 ~ 9006597 (-) False XLOC_006442
TCONS_00012466 lncRNA downstream 573597 8781540 ~ 8782492 (-) True XLOC_006438
TCONS_00013753 lncRNA upstream 139444 9501767 ~ 9558425 (-) True XLOC_006458
TCONS_00012542 lncRNA upstream 516223 9878546 ~ 9886518 (-) False XLOC_006465
TCONS_00012543 lncRNA upstream 519979 9882302 ~ 9886570 (-) False XLOC_006465
TCONS_00012544 lncRNA upstream 520084 9882407 ~ 9886278 (-) True XLOC_006465
TCONS_00013754 lncRNA upstream 714892 10077215 ~ 10080653 (-) False XLOC_006467
TCONS_00012522 mRNA downstream 20198 9333317 ~ 9335891 (-) True XLOC_006452
TCONS_00012521 mRNA downstream 37198 9313777 ~ 9318891 (-) True XLOC_006451
TCONS_00012520 mRNA downstream 44836 9303554 ~ 9311253 (-) True XLOC_006450
TCONS_00012514 mRNA downstream 55790 9288383 ~ 9300299 (-) False XLOC_006449
TCONS_00012517 mRNA downstream 60199 9288940 ~ 9295890 (-) False XLOC_006449
TCONS_00012529 mRNA upstream 78003 9440326 ~ 9442942 (-) False XLOC_006454
TCONS_00012531 mRNA upstream 84697 9447020 ~ 9450210 (-) True XLOC_006455
TCONS_00012532 mRNA upstream 102435 9464758 ~ 9467944 (-) True XLOC_006456
TCONS_00012533 mRNA upstream 130631 9492954 ~ 9496141 (-) True XLOC_006457
TCONS_00012534 mRNA upstream 155493 9517816 ~ 9521005 (-) True XLOC_006459
TCONS_00012519 other downstream 55848 9295685 ~ 9300241 (-) True XLOC_006449
TCONS_00012477 other downstream 346848 9003127 ~ 9009241 (-) False XLOC_006442
TCONS_00012459 other downstream 700642 8655119 ~ 8655447 (-) True XLOC_006435
TCONS_00012458 other downstream 706038 8649711 ~ 8650051 (-) True XLOC_006434
TCONS_00012435 other downstream 3035931 6288544 ~ 6320158 (-) False XLOC_006416
TCONS_00012530 other upstream 78005 9440328 ~ 9442332 (-) True XLOC_006454
TCONS_00012547 other upstream 717704 10080027 ~ 10114880 (-) False XLOC_006467
TCONS_00012548 other upstream 735528 10097851 ~ 10118935 (-) False XLOC_006467
TCONS_00012550 other upstream 902418 10264741 ~ 10264905 (-) True XLOC_006471
TCONS_00012560 other upstream 1550163 10912486 ~ 10912602 (-) True XLOC_006476

Expression Profile

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