RNA id: TCONS_00012553


Basic Information

Item Value
RNA id TCONS_00012553
length 4242
RNA type mRNA
GC content 0.40
exon number 11
gene id XLOC_006473
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 10360444 ~ 10620794 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATATGACATATAATTCAGGAAAGACTAATCGAGTCTAGAATCGTAAACGATAGCCATAATACGACAGTGTTCGATGACTTCGGTGGTTGATTCGATTTCCTTTTTGCCAGCACAAGTGGAGGTGGTGTACGGAAGTAGCATGGGATTTTATTACTAAGCAACAGAGAACCGGCGAATTGGTAAAACACGATTAAATTACGCCATGGACTTTAACCGCATCCGTAGAACAAATGCCAAATAAGCCTTCGATTAGACTCTGCATTCCGCAGCTGTTCTAGTGATACAGTGAGAAGTAATTTTCTGCATGAGTTCCAGCAGGTTGCTTTGGGATGAATAACGTTACATTTAAAGACGCCCCTTTGGCTGCGACAGAAATGCATGCGAATGATCACCAAAATCACGACTCTCACTGTGGAACCGATGTGGCCCGTGCACGATGGGCTCTTCTGCGACAGGTGCTGAAACAGAAGCAGCTCGACAGTCAAGATGTTCAGCAGGTGTCAGTGCGGAGATTCTCCTCCTTTAACCTGTTCTCCAGGAGCAGAGGGACTCCCCCAGAAACGGAGGACCCTTCTGACGGCCAGTGGGTGGAGTACAGAAGTGCAATCTTTCCCCAGTACAGTGCCTTACTCAGAGACAATCTTGGCCCCATTAGAGTGGATGAGGTTCTCAGCAGCTTTGACAACACGGGAAATGTCTGTGTCTGGCCTTCAGAAGAGGTGATGGCCTACTACTGCCTGAAGAAACGCCACATGTTTACGGGTTCCTCGGTCTGTGAGCTGGGTGGAGGAATGACATGTCTCGCCGGCCTCATGATTGCGGTTTGTGCTGATGTGAAGGAAGTGCTGCTATCTGATGGAAACGAGAAGGCAATTCAGAATGTGCGCAGCGTAATTGAGAGAAACAGACGAGAAGGGCTCTTCCTGTCTACCAACGTGTCAAGCAGggTGGTGAGATGGGACAATGAGGCTGATGTGTCTTCTTTGGAAAGTCGCTTTGACGTGGTGATGTGCGCTGACTGTCTGTTTCTTGACCAGTACAGAGGCAGTCTGGTTGATGCACTAAGAAGATTACTGCGACCTGATGGCACGGCTCTAGTATTTGCCCCTACCAGAGGAGACACACTGGCAGAATTCAGCCGACTGGCAGAGAGCGTAGGCCTGAGAGTGTGCCGCTACGATAACTACGATTCACACTTGTGGGACCTTCATCTAAAGATGCAGCAAGAGGGAAAGGAGGTGTACGATGAGAACATCCACTATCCTCTTCTACTGACTCTTACTCATGGGTCCAGTCCAGCCCTGATCTGACCTGATCACCACTGGGCAAAGCCATCTCATGCCAGGCTGCCTTCCTGTACCGCCCACCCCGCCTGTGCCACTGTGTGTgtggttgtatgtgtgtgtgtgtgcgtatgtctgtgtgtatgtgtgagcaccAGGGCTAAGCGGCCACTTATCACACTCCTCAACTTTTTTTAACtaccgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgctttgaAAAACAAACTATGTATGTAGGTgagtcactgtgtgtgtttgacctGTTTACTGTGCAACACCAGTGTGAAATGTGTTCAATGGGAAGGGAGAACACATCCCTCCCTCTCATAATAACAAAAGAAGCTGTGGATGTGATGCTCAGATATGAACTCATTCAATGCCTGTGAGGATGCGTGATATCAGAGATGATGATGATTCAGGGCAGAACCTTATGATTTTATGAGTTTGACTCTGGAGGCTGATACAGCTAATCAGGTTGGCCTCGTAAATGAGGCCGTCTTGGTCATGAGATCTAGTTATTGTAATGATACCAGCTCTCAGTTCACCGTTAGACACTGATTCTGTATTTACACTCAGAGGTTGACTCTGACACCAAAGGTTAGGGTGGTTGAGATGGATTCTGCTGCTGCGCTGAATGTTATTTGCTTCACTGTGAATTTCTCTCACATCGAAAACTGAAAAGATATGACAGATCAGGCCAGAATTGCTGAACTGATGTCTTGACTGTGTCACTACACACTGCTTTACTGGTAAGACCCGCAGCACTGTTCTTCTTTAAAGATATATTTCACCACAGATATGATAAATATGGTGTCTTTTACTCATTGCCTGTTTAGGTCAGCAATTAAGAATGcattcaaacaaacaataaaaggtaacactttacaataaggttatattaattaattttagttttacgaacactgaaaaataaatttattactgtatttgttAAAGGCACCTATGATTAAAATCATCTTTTGAAAGATGTTTGGACAATTGTGTATAGGTATGATGCGTCCACAGTCATACTGCGGTGATTTAAAGACATTACATCTGGGGTCTCGATAGAGCCCCACTATCTCTTTTAAATgaatttgcttttctttttatcTTAGTAAAATGAATGTGCTGTTTTCCATGCAATTAAAGTAGATAGAGACTGTATGCAGGATTGTTAAGAGCAGTGATGCCCAAACTTTTTGTTATTAGGGGCCAAATACCAATCTTGATTGAGAGTTGTGGGCCGAAGGTATTTCAAGCTGTATAACAAAATTACCATTGATAATATCCATTAATAGAAAACATGATCAGATTAAGCaatgcttatatttatttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacactttataaTGATATTAGTTTCATTTATAGCACAATTGAGTTTAACGCCAAAAACACTAGTCAAGCTGCATCTGTCTTTGCCTTGGTTTGCTCACTGAGGATTTCTGAGTTGTGGTGTTGAGCAACTGGATGTTCATTAAAAGAAtcctaataataatttacaatatataattgaaatatttaatcaaagttagttttttgtagcttaaattaaaacaaacaaaggttatgttaaattagaaatgaccaTGTGTGTAAGGTATTAACCCAAATTCTCCCCAAAATTCTCCCTCAGGTTGTTCTCACTAGTTTGGGTATCTCTGATTTTGGATATAATGGcttaaattttgtattttctgCACACAAATGCTTTAAATTGTGtcaaataatttaatgttttggtatttttttagaaACCTGACACTGATCACCATCTACTTTTACTGCATGGGAAAAGAGCAGCTTGAACGCTCGCTAGAAATGTTTCAtggaagaaagagagaaaaaagtttttaaaaaaatttacaatatatgacttaattttcatttttaggtataCTGGACCTTGTTCACACTTGCTATTTTCTTCTCTTGGTTTGTTTGGTCTGGTACAAAAGTGGAAATGATACATTTAGTCCTGGTTCACTTAATGTTCGCACTATAcgttttattatttacaatagaATGCCTTTCATGACATAATTCTTGACTTAAGAACTTACAAAAGATCCTAAACAATGTTTTGTGCTTTTGTTAGgccttttaaaatgtgtaaaagagTCAAACAGCACTAGAAATTCCTCCGCCTCATACATAATATAGAATCTGCTGCAAGAGGTGTTTCTGATGCCTGTATTGAGCAACACCAGGGTTTTTACATACAAACAGCCTTTTAATAGCCACATTTTATAACATCATATTctgttttggtttgtttaaatgtgtttggTCTGTATTGCAGCCATATTCCAGTCAAACCACTCAATAGACTGAGCCTTAAACATTTTGTGGTTTCAGTCTGTTTGTTTGGTTCAAATTCTATTTAATCAAACTAAACCTGACAAGTGCGAACACCAAAAGTGTGAACTGAATTAACAGGaaacaatgttgttgttttttctgatGTGTGGCATTTCTGTTGTATTCAGAAGAGTATTATTTTGCTCAAATATTAAACTCTATATCTATTTTATGGATTCTGTCGGTTAAATCTGTTGATTTTGTTTGTTATTCTGACACAGGGCTTTCTCACAGTAACCTTTTCTCCACTGTTGTTTTGTGCTGGTGGTGAGCTGGTGACACCTCATTCAGAGCTCTTTGGGTGGTTGTGAATTGTTCAGGGCTGTGCGCTTCAGCACTGTGATTACATTTGTACAAAACACGGATGAGTCCAAAGTGATTGTTTCTCACTGACACTGCAGGTGCTTGTAACGACTGTGattaaatcattgttttcaaTCCTCCTGTGTCCCAGTCATTTTTGTGTGGCACATAATGTGTAATTGATGT

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

Ensembl:

ensembl_id ENSDART00000191587

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013761 lncRNA downstream 13554 10331102 ~ 10346890 (-) False XLOC_006472
TCONS_00013760 lncRNA downstream 13557 10275286 ~ 10346887 (-) False XLOC_006472
TCONS_00012552 lncRNA downstream 13564 10333719 ~ 10346880 (-) True XLOC_006472
TCONS_00012551 lncRNA downstream 14195 10287702 ~ 10346249 (-) False XLOC_006472
TCONS_00013464 lncRNA downstream 107410 10250174 ~ 10253034 (-) True XLOC_006469
TCONS_00013465 lncRNA upstream 732346 11353140 ~ 11378392 (-) False XLOC_006479
TCONS_00012570 lncRNA upstream 756652 11377446 ~ 11378355 (-) False XLOC_006479
TCONS_00013762 lncRNA upstream 822044 11442838 ~ 11445390 (-) False XLOC_006480
TCONS_00013763 lncRNA upstream 822044 11442838 ~ 11445780 (-) True XLOC_006480
TCONS_00013466 lncRNA upstream 1496319 12117113 ~ 12118250 (-) True XLOC_006497
TCONS_00012549 mRNA downstream 99061 10258007 ~ 10261383 (-) True XLOC_006470
TCONS_00012545 mRNA downstream 464816 9889676 ~ 9895628 (-) False XLOC_006466
TCONS_00012546 mRNA downstream 464880 9890033 ~ 9895564 (-) True XLOC_006466
TCONS_00012541 mRNA downstream 473865 9878544 ~ 9886579 (-) False XLOC_006465
TCONS_00012540 mRNA downstream 484906 9855380 ~ 9875538 (-) True XLOC_006464
TCONS_00012556 mRNA upstream 28275 10649069 ~ 10672538 (-) True XLOC_006474
TCONS_00012557 mRNA upstream 61633 10682427 ~ 10731325 (-) False XLOC_006475
TCONS_00012558 mRNA upstream 63070 10683864 ~ 10727550 (-) False XLOC_006475
TCONS_00012559 mRNA upstream 75598 10696392 ~ 10730056 (-) True XLOC_006475
TCONS_00012561 mRNA upstream 305734 10926528 ~ 10945394 (-) False XLOC_006477
TCONS_00012550 other downstream 95539 10264741 ~ 10264905 (-) True XLOC_006471
TCONS_00012548 other downstream 241509 10097851 ~ 10118935 (-) False XLOC_006467
TCONS_00012547 other downstream 245564 10080027 ~ 10114880 (-) False XLOC_006467
TCONS_00012530 other downstream 918112 9440328 ~ 9442332 (-) True XLOC_006454
TCONS_00012528 other downstream 991909 9362226 ~ 9368535 (-) True XLOC_006453
TCONS_00012560 other upstream 291692 10912486 ~ 10912602 (-) True XLOC_006476
TCONS_00012566 other upstream 399480 11020274 ~ 11022106 (-) False XLOC_006478
TCONS_00012571 other upstream 757222 11378016 ~ 11378294 (-) True XLOC_006479
TCONS_00012573 other upstream 944942 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012589 other upstream 1353658 11974452 ~ 11974568 (-) True XLOC_006492

Expression Profile

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