RNA id: TCONS_00012561


Basic Information

Item Value
RNA id TCONS_00012561
length 2801
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_006477
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 10926528 ~ 10945394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACGCCGACCCTTATCAGTGGACCTTTGCTCCATTTGCTATAAAGAGTCGCTTTCTCCTCTACTTCTCTTCAGTTTTTGCAGGGAAACAAGAGGAGCGGGTACTTCTATAAGTTGGGTACTTGGCAAGAGGGGGAACAGACCCCTTTGTACCGCGTCCGCCATGTCAGACGATACAGTTTTCCACTCAGGAGAAAGTTTCAGCTCTTCTTATGAAAAACAGATAAAGGGTCGAGATATTCTTTTTTCATCTCCAGAGGAGGACAGCAGTCTGTATTTTACTTACAGCGGAGGCCGCAATGAACTGGAAGTCCGCAATCTCAACTATGAGGTGGACACAGCAGCACAAATACCCTGGTATGAGAAGCTGTCAGAGTTTAAGATGCCCTGGGAGATGCACAGCAATAAGCAGACGGTCATAAAGGATCTGAACCTGCATGTTCACAGTGGACAGATGCTTGCTGTCATTGGCAGCTCAGGCTGTGGGAAGACCTCCTTACTGGACATTATAACATGTCGAGATGAGGGTGGCTCCATGAATTCAGGAGAGATCCTGATCAACGGGAAACCTTCCACGCGATCTCTGGTGAAGAAAAGCATAGCTCATGTACGGCAGGATGACCGTTTGTTACCACATCTCACAGTACGAGAGACGCTAGCTTTTGTGGCAAAACTGCGTCTGCCTGCGAACTTCAGCCAAAAACAGAGAGATCAAAGGGTGGATGATGTGATTGCGGAGCTGCGTCTGAGGCAGTGCGCTCACACACGTGTGGGCAATGAGTATGTGAGAGGAGTGTCAGGTGGGGAGAGGAGGAGAGTCAGCATCGCTGTACAGCTCCTCTGGAATCCAGgTATACTCATTCTAGATGAGCCTACTTCAGGTCTGGACAGTTTCACGGCTCATAATTTGGTCATCACATTATATCGTCTGGCTCGAGGGAACCGGCTAGTGTTGCTGTCAGTGCATCAGCCTCGCTCAGATATCTTTCAGCTCTTTGACCTTGTGGTGCTGCTGTCCTCTGGTTCAGCCGTGTACTGTGGTCAGGCCAAAGACATGGTGTCTTACTTCACCACTCTCGGGTACCCGTGTCCACGCTATTGCAACCCGTCCGACTACTACGTGGACTTGATAAGCATTGATCGGCGCACTCCTGAAAAAGAAGCACAGTGTTTGGAGAAAGCCAGCATGTTGGCGGCCCAGTTTTTAGAGAAGGTGAAGAACAATGAAGATTTCATGTGGAAATCGGAAGTCTGTGGTCCTCCGGCACTGGAAGCCCCTCAAAGTGTTCCTTCTGTCTCAATGAAAGAATCAGTGATCACAGTTTCCAAACAGAAGGATCAGCTGCCGGGAAAAGTGCATCAGTTCACAACCTTAATCAGACGGCAGGTATTTAATGACTACCGGGACCTGGTGACACTGGTGGTTCATGGTTTAGAAGCTTTGCTGATGTCATTGCTCATCGGTTTCCTATATTTCGGGTGCACAGAGGAAGGTCTTTCCATCCAAGATACAGTGGCTTTGCTCTACATGATAGGAGCTCTGACACCCTTTGCTGTGGTGCTGGACGTCATCgcgaagtGTCATTCAGAGAGAGCCATGCTGTATCATGAACTGGAAGATGGCATGTACTCGGTCACCCCATACTTTTTTGCCAAGGTACTTGGAGAGCTGCCAGAGCACTGTGCCTTTACACTGGTATACGGTGTGCCCATCTACTGGTTGGCCGGGCTCAACGTCGCTCCTGATCGCTTTCTGCTCAACTTCCTGTTGGTTTGGCTGACGGTGTATTGTAGCCGCTCCATGGCACTGTTTGTGGCAGCAGCCCTGCCAACGCTGCAGACCTCATCTTTCATGGGCAATGCTCTTTTCACAGTATTCTACCTTACCGCTGGCTTTGTCATCAGTCTGGAAAACATGTGGATGGTGGCGTCTTGGTTTTCCTACATATCCTTCATGCGCTGGGGTTTTGAGGGGATGCTGCAGGTTCAGTTTCGTGGGACCAGAATCCCAATCACTATTGGAAACCTCACTGTAGAATTCGATGGTATTAAGgttgtggagatgatgaagatgaaccaGTATCCGCTGTTCTCCTGCTACCTGGTGCTTATTGCTGTTTCTTTGGTTTTCATATTGCTCTATTATCTGTCCCTCaaattcattaaacagaaatccaGTCAGGACTGGTGAGGGAGCGATATATTCTGGTCCATATTGGAGCTTGTTTTTGCCAAGCAGCTGTAAAGTTCCCAACTATAGATCTTGGAAAACAAATCTGTTTGTTTAGGCTAGTTTGCAACAAGAACCATATATCTGTTTCCAGTTTATTCAGTGCACTGATGCATATTCAGTTTATTCCTTCTCTTGTTTTCACTTGATTTAGTAGTTTGAAAGCTTACTAAAAACAGTGATCAAATCGTGAGCTTTGTTGTACTTCCACTCTCTGCCGCTGGATGGCAGAAGTGTACTATGTTTTTTcaatctttaaagggatagttcacccaaaaataggaCTTTCCTTATCATTTAAACACATAAGGTAtggatttctttcttctgttgaacacgaaacaatataagaaactcaaacaggtttgaaacaaatgaaagatgagtaaatgatgacaggatttttatttttgggtcaactatccctataatagttgtaaataatagttgtttttgtttgttttattttattttttgttaaatcacTTGAGATCATGCTTGCTAGatacatttaataacatttattgcaTCTCTTtagtgtaattttatttaatttcattttttactCCTGT

Function

GO:

id name namespace
GO:0042632 cholesterol homeostasis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050517-41 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in arteriosclerosis; familial hyperlipidemia; gallbladder disease; obesity; and sitosterolemia. Orthologous to human ABCG8 (ATP binding cassette subfamily G member 8).

Ensembl:

ensembl_id ENSDART00000159482

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013761 lncRNA downstream 579638 10331102 ~ 10346890 (-) False XLOC_006472
TCONS_00013760 lncRNA downstream 579641 10275286 ~ 10346887 (-) False XLOC_006472
TCONS_00012552 lncRNA downstream 579648 10333719 ~ 10346880 (-) True XLOC_006472
TCONS_00012551 lncRNA downstream 580279 10287702 ~ 10346249 (-) False XLOC_006472
TCONS_00013464 lncRNA downstream 673494 10250174 ~ 10253034 (-) True XLOC_006469
TCONS_00013465 lncRNA upstream 407746 11353140 ~ 11378392 (-) False XLOC_006479
TCONS_00012570 lncRNA upstream 432052 11377446 ~ 11378355 (-) False XLOC_006479
TCONS_00013762 lncRNA upstream 497444 11442838 ~ 11445390 (-) False XLOC_006480
TCONS_00013763 lncRNA upstream 497444 11442838 ~ 11445780 (-) True XLOC_006480
TCONS_00013466 lncRNA upstream 1171719 12117113 ~ 12118250 (-) True XLOC_006497
TCONS_00012557 mRNA downstream 195203 10682427 ~ 10731325 (-) False XLOC_006475
TCONS_00012559 mRNA downstream 196472 10696392 ~ 10730056 (-) True XLOC_006475
TCONS_00012558 mRNA downstream 198978 10683864 ~ 10727550 (-) False XLOC_006475
TCONS_00012556 mRNA downstream 253990 10649069 ~ 10672538 (-) True XLOC_006474
TCONS_00012553 mRNA downstream 305734 10360444 ~ 10620794 (-) False XLOC_006473
TCONS_00012564 mRNA upstream 35361 10980755 ~ 11035420 (-) False XLOC_006478
TCONS_00012565 mRNA upstream 36385 10981779 ~ 11072964 (-) False XLOC_006478
TCONS_00012567 mRNA upstream 92696 11038090 ~ 11048063 (-) True XLOC_006478
TCONS_00012568 mRNA upstream 229814 11175208 ~ 11378355 (-) False XLOC_006479
TCONS_00012569 mRNA upstream 407744 11353138 ~ 11378127 (-) False XLOC_006479
TCONS_00012560 other downstream 13926 10912486 ~ 10912602 (-) True XLOC_006476
TCONS_00012550 other downstream 661623 10264741 ~ 10264905 (-) True XLOC_006471
TCONS_00012548 other downstream 807593 10097851 ~ 10118935 (-) False XLOC_006467
TCONS_00012547 other downstream 811648 10080027 ~ 10114880 (-) False XLOC_006467
TCONS_00012530 other downstream 1484196 9440328 ~ 9442332 (-) True XLOC_006454
TCONS_00012566 other upstream 74880 11020274 ~ 11022106 (-) False XLOC_006478
TCONS_00012571 other upstream 432622 11378016 ~ 11378294 (-) True XLOC_006479
TCONS_00012573 other upstream 620342 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012589 other upstream 1029058 11974452 ~ 11974568 (-) True XLOC_006492
TCONS_00012595 other upstream 1160384 12105778 ~ 12105894 (-) True XLOC_006496

Expression Profile

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