RNA id: TCONS_00012563


Basic Information

Item Value
RNA id TCONS_00012563
length 1386
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_006477
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 10926528 ~ 10945394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTATAAGTTGGGTACTTGGCAAGAGGGGGAACAGACCCCTTTGTACCGCGTCCGCCATGTCAGACGATACAGTTTTCCACTCAGGAGAAAGTTTCAGCTCTTCTTATGAAAAACAGATAAAGGGTCGAGATATTCTTTTTTCATCTCCAGAGGAGGACAGCAGTCTGTATTTTACTTACAGCGGAGGCCGCAATGAACTGGAAGTCCGCAATCTCAACTATGAGGTGGACACAGCAGCACAAATACCCTGGTATGAGAAGCTGTCAGAGTTTAAGATGCCCTGGGAGATGCACAGCAATAAGCAGACGGTCATAAAGGATCTGAACCTGCATGTTCACAGTGGACAGATGCTTGCTGTCATTGGCAGCTCAGGCTGTGGGAAGACCTCCTTACTGGACATTATAACATGTCGAGATGAGGGTGGCTCCATGAATTCAGGAGAGATCCTGATCAACGGGAAACCTTCCACGCGATCTCTGGTGAAGAAAAGCATAGCTCATGTACGGCAGGATGACCGTTTGTTACCACATCTCACAGTACGAGAGACGCTAGCTTTTGTGGCAAAACTGCGTCTGCCTGCGAACTTCAGCCAAAAACAGAGAGATCAAAGGGTGGATGATGTGATTGCGGAGCTGCGTCTGAGGCAGTGCGCTCACACACGTGTGGGCAATGAGTATGTGAGAGGAGTGTCAGGTGGGGAGAGGAGGAGAGTCAGCATCGCTGTACAGCTCCTCTGGAATCCAGgTATACTCATTCTAGATGAGCCTACTTCAGGTCTGGACAGTTTCACGGCTCATAATTTGGTCATCACATTATATCGTCTGGCTCGAGGGAACCGGCTAGTGTTGCTGTCAGTGCATCAGCCTCGCTCAGATATCTTTCAGCTCTTTGACCTTGTGGTGCTGCTGTCCTCTGGTTCAGCCGTGTACTGTGGTCAGGCCAAAGACATGGTGTCTTACTTCACCACTCTCGGGTACCCGTGTCCACGCTATTGCAACCCGTCCGACTACTACGGTGAGTGGGACTCTAAAGTGATGACTGATCACTTTAGCTGATCCTGCTGTTTGGTTATTGTTTCTTAACTGTGAACTTCTAATGCAGTGGACTTGATAAGCATTGATCGGCGCACTCCTGAAAAAGAAGCACAGTGTTTGGAGAAAGCCAGCATGTTGGCGGCCCAGTTTTTAGAGAAGGTGAAGAACAATGAAGATTTCATGTGGAAATCGGAAGTCTGTGGTCCTCCGGCACTGGAAGCCCCTCAAAGGTAGCCTATAGAGTTTCAAATTTATATTGTTGTTACatcatgaagtttttttttttcctttgtttttttcatttctcCACGAAATGCGTGAACTGTCATAATAAATTTTCTGTGAAGTCTTA

Function

GO:

id name namespace
GO:0042632 cholesterol homeostasis biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-050517-41 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in arteriosclerosis; familial hyperlipidemia; gallbladder disease; obesity; and sitosterolemia. Orthologous to human ABCG8 (ATP binding cassette subfamily G member 8).

Ensembl:

ensembl_id ENSDART00000114315

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013761 lncRNA downstream 589540 10331102 ~ 10346890 (-) False XLOC_006472
TCONS_00013760 lncRNA downstream 589543 10275286 ~ 10346887 (-) False XLOC_006472
TCONS_00012552 lncRNA downstream 589550 10333719 ~ 10346880 (-) True XLOC_006472
TCONS_00012551 lncRNA downstream 590181 10287702 ~ 10346249 (-) False XLOC_006472
TCONS_00013464 lncRNA downstream 683396 10250174 ~ 10253034 (-) True XLOC_006469
TCONS_00013465 lncRNA upstream 407852 11353140 ~ 11378392 (-) False XLOC_006479
TCONS_00012570 lncRNA upstream 432158 11377446 ~ 11378355 (-) False XLOC_006479
TCONS_00013762 lncRNA upstream 497550 11442838 ~ 11445390 (-) False XLOC_006480
TCONS_00013763 lncRNA upstream 497550 11442838 ~ 11445780 (-) True XLOC_006480
TCONS_00013466 lncRNA upstream 1171825 12117113 ~ 12118250 (-) True XLOC_006497
TCONS_00012557 mRNA downstream 205105 10682427 ~ 10731325 (-) False XLOC_006475
TCONS_00012559 mRNA downstream 206374 10696392 ~ 10730056 (-) True XLOC_006475
TCONS_00012558 mRNA downstream 208880 10683864 ~ 10727550 (-) False XLOC_006475
TCONS_00012556 mRNA downstream 263892 10649069 ~ 10672538 (-) True XLOC_006474
TCONS_00012553 mRNA downstream 315636 10360444 ~ 10620794 (-) False XLOC_006473
TCONS_00012564 mRNA upstream 35467 10980755 ~ 11035420 (-) False XLOC_006478
TCONS_00012565 mRNA upstream 36491 10981779 ~ 11072964 (-) False XLOC_006478
TCONS_00012567 mRNA upstream 92802 11038090 ~ 11048063 (-) True XLOC_006478
TCONS_00012568 mRNA upstream 229920 11175208 ~ 11378355 (-) False XLOC_006479
TCONS_00012569 mRNA upstream 407850 11353138 ~ 11378127 (-) False XLOC_006479
TCONS_00012560 other downstream 23828 10912486 ~ 10912602 (-) True XLOC_006476
TCONS_00012550 other downstream 671525 10264741 ~ 10264905 (-) True XLOC_006471
TCONS_00012548 other downstream 817495 10097851 ~ 10118935 (-) False XLOC_006467
TCONS_00012547 other downstream 821550 10080027 ~ 10114880 (-) False XLOC_006467
TCONS_00012530 other downstream 1494098 9440328 ~ 9442332 (-) True XLOC_006454
TCONS_00012566 other upstream 74986 11020274 ~ 11022106 (-) False XLOC_006478
TCONS_00012571 other upstream 432728 11378016 ~ 11378294 (-) True XLOC_006479
TCONS_00012573 other upstream 620448 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012589 other upstream 1029164 11974452 ~ 11974568 (-) True XLOC_006492
TCONS_00012595 other upstream 1160490 12105778 ~ 12105894 (-) True XLOC_006496

Expression Profile

//