RNA id: TCONS_00012592


Basic Information

Item Value
RNA id TCONS_00012592
length 4938
RNA type mRNA
GC content 0.41
exon number 17
gene id XLOC_006494
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 11988464 ~ 12006007 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTTCAGAAAGACAAAATAATCGAGTCGTCGCAGCCAGAGGTTGAAGTTATTCCAGTGCCAGTGGAAGCGGTTGCAGATACCCAGTGTCCAGTTGACGAGCCCACCATCGAGATTGAGCGAACAGGCCGCAGGAAATTCATCACCGGTGTTGTGGAGGGCTTCTATGGACGGCCATGGACTATGGAACAAAGGAAAGAGCTTTTCAGGAGGCAGCAGAAATGGGGCTTGAACACATATTTGTATGCCCCAAAAGATGACTACAAACACAGAATGTTTTGGAGAGAAATGTATTCTGTTGAGGAAGCAGagcaactCACAACTTTGATAAGTGCTGCTAAAGAGTATGGGATTGAGTTCATTTATGCCATTTCTCCGGGCCTGGACATTACTTTCTCAAATCAAAAGGAAGTGTCGACACTTAAAAGGAAATTAGACCAGGTCACTCATTTTGGGTGCAAGTCCTTTGCCTTACTGTTTGACGACATTGATCATAACATGTGTCCGGCTGACAAGGAGGTATTCAGCTCTTTTGCACATGCCCAAGTCTCTGTCACCAATGAGATCTTCCAATATTTGGGAGAAcctgaaatatttttgttttgcccCACAGAGTATTGTGGAACATTTTGTTATCCAAATGTGTCACAATCGCCTTACCTGCGCACAATAGGTGAAAAGCTACTTCCTGGTATTGAGGTGTTATGGACAGGTCCCAAAGTAGTATCTAAAGACATAACCGTTGAATCAATTGAAGAAGTCACAAAGATACTAAGGAGAGCTCCTGTAATCTGGGACAACATCCATGCTAATGACTATGATCAAAAGAGACTTTTCTTGGGACCTTATAAAGGCCGGTCTACAGAACTCATTCCTCGGCTAAAAGGAGTCCTTACCAACCCCAACTGTGAATTTGAGTCTAATTTTGTGGCTATTCACACGTTAGCCACATGGTATAAGTCTAACATGAATGGAGTGAGGAAAGATGTGGTCATGACTGACAGTGAAGACAGCACTGTGTCCATCCAGATAAAGCTGGAAAACGAGGGCAGTGATGAGGAGCTAGAAACTGATATCCTCTACAGCCCACAGATTGCACTCAAGCTAGCTCTCACTGAATGGCTGAGCGAGTTTGGCGTCCCTCATCAGTACAACAGCCGGCAAGTGCCTCACAGTGGAACAAAAAGCACTACTATGGATGTTCCCACTCTTGCTGCATCCACCCTGGTCACTTCCACTACAGTGACCACAGTCTTCCAACAGCCCATCATGAGTCCGGTTTTGCCCCTTTCTGATGAACCACATGTGCTTggcaaagaagaagaagaggaggtggAGAAGAAGGAGTCTGATGAAGAACCCATGGAGATGGTCGTGGAGAAACACGACGAGGTGGAGGACACCAAAAATGTCAACCAGATTCTAACAGAGATCGTCAAAGCCAAGATGACGGAAGATCTCAAACCTATGGACACTGATAAAGAGAGCCTGACAGAGTCCAAATCACCAGAAATGTCCATTCAAGAGGATTCAGGCAGTGATATTGCACCGATGCAAACAGATGATCAGCTCAATAAGGAAGTGTTTGTTCCTGGCCCCAACGAGAAACCACTCTTCATTACCGAGGCACTTACTCTGGAGGATCTGACGCTGCTGGCTGAACTTTTCTACCTGCCTTACGAACATGGTCCAAAATCAGTACAGATGCTGAAAGAGTTTAACTGGTTGAGAGCCAATAGCAATTATGTTAGTGTCAACTCCAAAGCAAAGGATCCAGAGAAGGTAACTGAGTGGCAATCCAGAGCTGAAAACTTTGAGGAGATGTGCTGCTCTGTCATGCAGATGTTCACCAGACTCTCAAACTCCGCCAACAGGACCATTCTTTATGACCTGTATCCCTATATCTGGGATATAAAGAGTATCATCTCAATGGTGAAATCATTTGTTCAGTGGTTAGATGGAAGAATCCTCGGCACAAGTTTCTACTGCTATTGGACGGACAGTGCCCGATGGTGTCGTAGTCAGTCGTCAGCACAGTTCTTAAGTGGCGACCAAGAGCCCTGGGCCTTTAGGGGCGGTCTAGCAGGAGAGTTCCAGAGACTGTTGCCAATTGATGGAGCAAACGATCTTTTCTACCAGCCACCGCCATCAATGCCAACTTCCAAAATCTATACCATAAGGCCTTACTTTGCCAAAGATGAGTCTGCCATCTATAAGATCTGCAAGGAGATGTTCACTGAGAGCTGTGAGGGCATTTCTTTCTCAGATGAATCACCGGACCTTATTGGAGACAGGTTAGTGGGAGGTTTCCTGACACTCAGTCCAGACTATGGCTTTGTGCTTGAGGATGAGGAAGGTGTGTGTGGCTATGCTATGGGCACTGTGGATGTCAAGCCTTTCGTGAAGAAATGTAAGCTTAGTTGGATTCCGTTCATGCAGGAGAAATACATCAAGCCAGACGCAGAGAAGGACCTTTCAGAGGCTGAGAAAATGATGCTGAGTTTTCATGAGGAAGAAGACGGTTTGCCAGAATCATTCCTCAGGAACTTCCCATCACTCATAAAAGTAGATATTCACGCAAAGGTCACTGACCCCAGTGTTGCCAAAAGCATGATGGGTTGTCTTCTCTCATCACTGAAAGCTAATGGCTCACATGGTGCTTTCTGTGAGGTCCGGCAGATTGACAAAAGGATGTTGGACTTTTATAGCAAACTGGGCTGCTTTGAAGTGGCCAAGATGGAGGGATTTCCAAAAGACATTATTATTATGGGGAGGAGTTTGTGAATCTGAGCCCcccctacaaaaaaaaacaaaagcatacaGAAGGAGCCTCTTAGAAAATGCACAAAGCTTTGGCCCCAACTTGCTACCTGTTCATGTAAATCTCATGTTTTGTAATCTCAGCCATCACTTGTTTAGGCCTGTAAAGGTAGCCTGATTCACATCATTACGTCCAGTGCACTTCTAGAGTTTTAGCTGCTGTTGATTCACTTTGCCAGATTGCCGTGGATGCTCAGAGTTTGAAAGTGAgaatggaaaaagaattgaagTGAGTCTGCAAGAGTAATTCGGAGCGCATGATTTACTCTGACTGTTTTCCGGTGGATTGCTTGAGTTGGCCGAGTGCCACCGAACCCACTTAAATCTCTTAGATGTGACCCAGTTGCGGTTAGCGTTATGTGCATGTTTAGGTTAACATCTAGATTCTCCTGACTAAAAGTTTACCATTACTTGATAAGAGCCGTCAACACCCTACTGTTCCTAATTGTTAATTTCAGTACTTCTACAGTGTTCGAAGCAATAATCTAGACTTCACGGCGGTCAGGTTTTGTTATTGCTTTCCCGGACGTTGTAATAAATTCTGCAGTTTTCCAGGTTCAAACGGTGTCGGTGGGCTCATACGGGGAATACGGCAGGCTAAAGCTGTCCTTTGAGATTTGggtgttctttaaaaaaagaaaagaaaacagaagCTGAACTTTCTGTGCTGAGCAGGCAGGAGTCAGTGGAGTCGAACCATACACATTCATTGATTTAAGACTGCATGGGATGCTTTTGTGTCAGCCTTTAGCATGGGTATCTTTTAACGATACGTTTTGTTGTTTTGTACAAAAAATGCTTTATGGCTCTTGCCCTTCTATGTAATATATGTGAGGGTAATGACGAGTACTTTTGCACACTTCTGCCTTTGTTTTAGTGGTGAGTTATACAATTCTGAGGCGTAACAGGGTTGCATTAGGATTGTGAGATGCTGATGTGTTGTTTACGAAAAGAACTTTTTGTTTTATCTTAACCCTGAAGACCAATGCCCTGCACAATTTCTCTAATTCGAGAGAAATCTAAAACTTAATGAAGGTACATTCATGGATTATCTTTGGAATACCCAATGTCCTTTTTTTCTGATGCCTAAAGACCACAACACCATTGCTTGTTTATTATGAGTGTCAGCttgtgaatatatttaaaagCCCCGCAGTTTGAAGCAGTGTTTTTTTCCTGAAGGCCACTATATAAACGTGACAtcaggatttttttcttttacttagaTGCAATGCAGACGGTTTATTCTGTTTTCCCTTTTTAAaccttaacttttttttgtaaaatatctaTCATCGTGCTGTATCCTCAAACAAAACATCAAACTAGATTAGCACAAAAGCCTCCTGCAGATTTCCATATGTAATGTTTTTGAAATAATGcgtgggatttaaaaaaaaaaaaaaaaaactataatcatTTTGTGCATGTGGCAGGTCAACCGTTTTGACCTTTTGTCACATTTTCCCAGCCCTGTTTAAGAGATATTTGTACTCCAAAATTGCTTATTGTTTATTCCTAATGGCTTATTGctcaagtcatttgattttggtTATTCACATCCAAGTGTAAAGGgcttttgtttcttctttttttaaaggtcATACAATGCATTTGTTTAAAGAGTTGAAGACCTTTCTGTACTTTGATGTAATTATGattatgtatatgtaatataGTTGTAATTTCTGTAAGGGTTGTATGTAAGTAAGAtggttattaaaatgttacatagAAAATCACCTGTGATCTTTGAGTCATGTGCAAAATGCTTTCTGGGGGAGGTtctaccagaaacatacattttcacttaGAAAAATGTATCTGGGCCTGACTTTTAAGCTTTTTCTTTAAACATCATAcaaaaataagcataaaatcatacataTTAAATGATTCAACGCATTCTTAATCACTGGTAGCTTCTTTTTTATGCATATAGTGAGAATATACAATCACAGtattataaagaaaatgaaaaaaaatgttgaaatcaagacaaaaacagaaggggTATATACACATCACACAATAAAgtttatattcataaaaaatatatcatttacaaATTTCAGTggttttaaggctttttttttttttagtaaaactgcatttttg

Function

GO:

id name namespace
GO:0009100 glycoprotein metabolic process biological_process
GO:0016231 beta-N-acetylglucosaminidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3208 Predicted to enable beta-N-acetylglucosaminidase activity. Predicted to be involved in glycoprotein metabolic process. Orthologous to human OGA (O-GlcNAcase).

Ensembl:

ensembl_id ENSDART00000180302

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013763 lncRNA downstream 542684 11442838 ~ 11445780 (-) True XLOC_006480
TCONS_00013762 lncRNA downstream 543074 11442838 ~ 11445390 (-) False XLOC_006480
TCONS_00013465 lncRNA downstream 610072 11353140 ~ 11378392 (-) False XLOC_006479
TCONS_00012570 lncRNA downstream 610109 11377446 ~ 11378355 (-) False XLOC_006479
TCONS_00012552 lncRNA downstream 1641584 10333719 ~ 10346880 (-) True XLOC_006472
TCONS_00013466 lncRNA upstream 111684 12117113 ~ 12118250 (-) True XLOC_006497
TCONS_00012599 lncRNA upstream 473839 12479268 ~ 12486058 (-) False XLOC_006499
TCONS_00012600 lncRNA upstream 474053 12479482 ~ 12486008 (-) False XLOC_006499
TCONS_00012602 lncRNA upstream 478918 12484347 ~ 12486050 (-) True XLOC_006499
TCONS_00013467 lncRNA upstream 581568 12586997 ~ 12587412 (-) True XLOC_006502
TCONS_00012590 mRNA downstream 1710 11975954 ~ 11986754 (-) False XLOC_006493
TCONS_00012591 mRNA downstream 3597 11976397 ~ 11984867 (-) True XLOC_006493
TCONS_00012586 mRNA downstream 17303 11963789 ~ 11971161 (-) False XLOC_006491
TCONS_00012588 mRNA downstream 17316 11966165 ~ 11971148 (-) True XLOC_006491
TCONS_00012587 mRNA downstream 20695 11963792 ~ 11967769 (-) False XLOC_006491
TCONS_00012594 mRNA upstream 2475 12007904 ~ 12021566 (-) True XLOC_006495
TCONS_00012596 mRNA upstream 372645 12378074 ~ 12389748 (-) False XLOC_006498
TCONS_00012598 mRNA upstream 473835 12479264 ~ 12486076 (-) False XLOC_006499
TCONS_00012603 mRNA upstream 483434 12488863 ~ 12494575 (-) True XLOC_006500
TCONS_00012604 mRNA upstream 538205 12543634 ~ 12581388 (-) True XLOC_006501
TCONS_00012589 other downstream 13896 11974452 ~ 11974568 (-) True XLOC_006492
TCONS_00012573 other downstream 422601 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012571 other downstream 610170 11378016 ~ 11378294 (-) True XLOC_006479
TCONS_00012566 other downstream 966358 11020274 ~ 11022106 (-) False XLOC_006478
TCONS_00012560 other downstream 1075862 10912486 ~ 10912602 (-) True XLOC_006476
TCONS_00012595 other upstream 100349 12105778 ~ 12105894 (-) True XLOC_006496
TCONS_00012597 other upstream 372786 12378215 ~ 12389563 (-) True XLOC_006498
TCONS_00012601 other upstream 475949 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012615 other upstream 1581867 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012616 other upstream 1639016 13644445 ~ 13644562 (-) True XLOC_006511

Expression Profile

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