RNA id: TCONS_00013466


Basic Information

Item Value
RNA id TCONS_00013466
length 725
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_006497
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 12117113 ~ 12118250 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAACACAAAGTTTCCAaaagaaaatttatttatttattaggaacAAAGTAACAAACTAAAACATTTGAATGAAGTAAAGTCAAATCTAGACCTAAAGCAAATATACATCACCaaatcaattaaacaaacaaagagaaaaagaaaagcagacctctctttaaacacacaaacgggcttatatataaaaaagacagTGAGTAGCACATTACAAAAAGGAAACTAAACatcacaaactaaaacaaaacaaccaCCAAACATAGTCAAACAGTacacttaaaataattaaccaatatataaacaaaaatagcaattcatataataataaacaaaaataaagaaataaatattcaaaCACCCCCCTCAGCCAATTTGTATGTTGGTTTAGTCAGGCGGAACAAAATGTCTGCAAATGTTGCCAGCCGGTCCCTTAGAGCAGCCGGACCTCTGTTAGACTGCAGTCTCTGGAGCACAGAGCCACGCCATCTTGGATCCCACAGGAAGACTTACAAAGAGATGGTAATTATTGGCTTGCATTATATGCATCATCGAGGATAACATTGTTCATGAAGAATACTcttttttaagaaagaaaaattGGATGAAATGAGGGTAAGTTCATGGAAAATTTTTATTTCTGAGTGAGCTTAAAACTATAAGTTTGGTCAAATAATAAGTAGGAAAAAAACATCTAGGCAGACTTTCTTGATGCTACTACCCCATCCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013763 lncRNA downstream 671333 11442838 ~ 11445780 (-) True XLOC_006480
TCONS_00013762 lncRNA downstream 671723 11442838 ~ 11445390 (-) False XLOC_006480
TCONS_00013465 lncRNA downstream 738721 11353140 ~ 11378392 (-) False XLOC_006479
TCONS_00012570 lncRNA downstream 738758 11377446 ~ 11378355 (-) False XLOC_006479
TCONS_00013761 lncRNA downstream 1770223 10331102 ~ 10346890 (-) False XLOC_006472
TCONS_00012599 lncRNA upstream 361018 12479268 ~ 12486058 (-) False XLOC_006499
TCONS_00012600 lncRNA upstream 361232 12479482 ~ 12486008 (-) False XLOC_006499
TCONS_00012602 lncRNA upstream 366097 12484347 ~ 12486050 (-) True XLOC_006499
TCONS_00013467 lncRNA upstream 468747 12586997 ~ 12587412 (-) True XLOC_006502
TCONS_00012608 lncRNA upstream 524018 12642268 ~ 12646717 (-) False XLOC_006504
TCONS_00012594 mRNA downstream 95547 12007904 ~ 12021566 (-) True XLOC_006495
TCONS_00012593 mRNA downstream 111106 11988833 ~ 12006007 (-) True XLOC_006494
TCONS_00012592 mRNA downstream 111684 11988464 ~ 12005429 (-) False XLOC_006494
TCONS_00012590 mRNA downstream 130359 11975954 ~ 11986754 (-) False XLOC_006493
TCONS_00012591 mRNA downstream 132246 11976397 ~ 11984867 (-) True XLOC_006493
TCONS_00012596 mRNA upstream 259824 12378074 ~ 12389748 (-) False XLOC_006498
TCONS_00012598 mRNA upstream 361014 12479264 ~ 12486076 (-) False XLOC_006499
TCONS_00012603 mRNA upstream 370613 12488863 ~ 12494575 (-) True XLOC_006500
TCONS_00012604 mRNA upstream 425384 12543634 ~ 12581388 (-) True XLOC_006501
TCONS_00012605 mRNA upstream 473258 12591508 ~ 12602920 (-) True XLOC_006503
TCONS_00012595 other downstream 11219 12105778 ~ 12105894 (-) True XLOC_006496
TCONS_00012589 other downstream 142545 11974452 ~ 11974568 (-) True XLOC_006492
TCONS_00012573 other downstream 551250 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012571 other downstream 738819 11378016 ~ 11378294 (-) True XLOC_006479
TCONS_00012566 other downstream 1095007 11020274 ~ 11022106 (-) False XLOC_006478
TCONS_00012597 other upstream 259965 12378215 ~ 12389563 (-) True XLOC_006498
TCONS_00012601 other upstream 363128 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012615 other upstream 1469046 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012616 other upstream 1526195 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012619 other upstream 1552190 13670440 ~ 13670537 (-) True XLOC_006513

Expression Profile

//