RNA id: TCONS_00012602


Basic Information

Item Value
RNA id TCONS_00012602
length 578
lncRNA type retained_intron
GC content 0.34
exon number 4
gene id XLOC_006499
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 12479264 ~ 12486076 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGCACAGAAACGCAAGAGAAGAACTTTTATAAAGCGTTGAGTTCAGTTGATGAGTGTGCTGCAGGCGACGTACATAATCAGTCCAATGAATATGGCAGATAATCTCAGAAGCTATTTGTATAAACAACTACCAAGTGTTGAAGGACTTCATGCAATTGTGGTGACAGATAGAGATGGGGTCCCTGTAATCAAAGGTGAAAACCAGATctcagatttttacatttttgtgcacacTACTGGTCAAATGTATAAAAACAGTAAGATTTCCTTTacttcatttaattaaaacatgaatgtagcaacaaaaaaaaaaaagtttattcctTTGAATCAAAGTTGTGAGTATTATTACTTTCTTTAGTCTTCAgttgggctgcacgatattagaaaaatcaaGCATTgcgataattttttattttgcgatttgaatacagtttcaccagattacttgaatatctctatttggaaagattttataATATTAgatcgattgggatgattctgcaatGGGAGTGTATCtccataaaatacaataatctaTAAACGTTTTGGGGCCCCTTACACATTTTTcatgtgg

Function

GO:

id name namespace
GO:0034613 cellular protein localization biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032006 regulation of TOR signaling biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0005768 endosome cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0016020 membrane cellular_component
GO:0060090 molecular adaptor activity molecular_function
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04150 mTOR signaling pathway

ZFIN:

id description
ZDB-GENE-050522-345 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in cellular protein localization; cellular response to amino acid stimulus; and positive regulation of TOR signaling. Predicted to act upstream of or within regulation of TOR signaling. Predicted to be located in late endosome membrane. Predicted to be part of Ragulator complex. Orthologous to human LAMTOR3 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 3).

Ensembl:

ensembl_id ENSDART00000147994

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013466 lncRNA downstream 366097 12117113 ~ 12118250 (-) True XLOC_006497
TCONS_00013763 lncRNA downstream 1038567 11442838 ~ 11445780 (-) True XLOC_006480
TCONS_00013762 lncRNA downstream 1038957 11442838 ~ 11445390 (-) False XLOC_006480
TCONS_00013465 lncRNA downstream 1105955 11353140 ~ 11378392 (-) False XLOC_006479
TCONS_00013467 lncRNA upstream 100947 12586997 ~ 12587412 (-) True XLOC_006502
TCONS_00012608 lncRNA upstream 156218 12642268 ~ 12646717 (-) False XLOC_006504
TCONS_00012609 lncRNA upstream 158929 12644979 ~ 12646728 (-) True XLOC_006504
TCONS_00012611 lncRNA upstream 173063 12659113 ~ 12659765 (-) True XLOC_006505
TCONS_00013764 lncRNA upstream 262602 12748652 ~ 12756661 (-) True XLOC_006507
TCONS_00012596 mRNA downstream 94599 12378074 ~ 12389748 (-) False XLOC_006498
TCONS_00012594 mRNA downstream 462781 12007904 ~ 12021566 (-) True XLOC_006495
TCONS_00012593 mRNA downstream 478340 11988833 ~ 12006007 (-) True XLOC_006494
TCONS_00012592 mRNA downstream 478918 11988464 ~ 12005429 (-) False XLOC_006494
TCONS_00012591 mRNA downstream 499480 11976397 ~ 11984867 (-) True XLOC_006493
TCONS_00012603 mRNA upstream 2813 12488863 ~ 12494575 (-) True XLOC_006500
TCONS_00012604 mRNA upstream 57584 12543634 ~ 12581388 (-) True XLOC_006501
TCONS_00012605 mRNA upstream 105458 12591508 ~ 12602920 (-) True XLOC_006503
TCONS_00012606 mRNA upstream 147173 12633223 ~ 12646752 (-) False XLOC_006504
TCONS_00012607 mRNA upstream 147174 12633224 ~ 12645584 (-) False XLOC_006504
TCONS_00012597 other downstream 94784 12378215 ~ 12389563 (-) True XLOC_006498
TCONS_00012595 other downstream 378453 12105778 ~ 12105894 (-) True XLOC_006496
TCONS_00012589 other downstream 509779 11974452 ~ 11974568 (-) True XLOC_006492
TCONS_00012573 other downstream 918484 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012571 other downstream 1106053 11378016 ~ 11378294 (-) True XLOC_006479
TCONS_00012615 other upstream 1101246 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012616 other upstream 1158395 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012619 other upstream 1184390 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012624 other upstream 1898371 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012658 other upstream 3821717 16307767 ~ 16307883 (-) True XLOC_006537

Expression Profile

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