Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012609 |
| length | 727 |
| lncRNA type | retained_intron |
| GC content | 0.35 |
| exon number | 2 |
| gene id | XLOC_006504 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 12633223 ~ 12646752 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006066 | alcohol metabolic process | biological_process |
| GO:0006070 | octanol metabolic process | biological_process |
| GO:0046292 | formaldehyde metabolic process | biological_process |
| GO:0046294 | formaldehyde catabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0018467 | formaldehyde dehydrogenase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0004022 | alcohol dehydrogenase (NAD+) activity | molecular_function |
| GO:0004024 | alcohol dehydrogenase activity, zinc-dependent | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0051903 | S-(hydroxymethyl)glutathione dehydrogenase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030529-2 | Enables alcohol dehydrogenase (NAD+) activity and formaldehyde dehydrogenase activity. Acts upstream of or within formaldehyde metabolic process and octanol metabolic process. Predicted to be active in cytosol. Is expressed in female organism; intestine; liver; ovary; and yolk syncytial layer. Human ortholog(s) of this gene implicated in alcohol use disorder; late onset Parkinson's disease; and pancreatic cancer. Orthologous to several human genes including ADH1A (alcohol dehydrogenase 1A (class I), alpha polypeptide); ADH1B (alcohol dehydrogenase 1B (class I), beta polypeptide); and ADH1C (alcohol dehydrogenase 1C (class I), gamma polypeptide). |
| ensembl_id | ENSDART00000133315 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00013467 | lncRNA | downstream | 57567 | 12586997 ~ 12587412 (-) | True | XLOC_006502 |
| TCONS_00012599 | lncRNA | downstream | 158921 | 12479268 ~ 12486058 (-) | False | XLOC_006499 |
| TCONS_00012602 | lncRNA | downstream | 158929 | 12484347 ~ 12486050 (-) | True | XLOC_006499 |
| TCONS_00012600 | lncRNA | downstream | 158971 | 12479482 ~ 12486008 (-) | False | XLOC_006499 |
| TCONS_00013466 | lncRNA | downstream | 526729 | 12117113 ~ 12118250 (-) | True | XLOC_006497 |
| TCONS_00012611 | lncRNA | upstream | 12385 | 12659113 ~ 12659765 (-) | True | XLOC_006505 |
| TCONS_00013764 | lncRNA | upstream | 101924 | 12748652 ~ 12756661 (-) | True | XLOC_006507 |
| TCONS_00013765 | lncRNA | upstream | 940568 | 13587296 ~ 13589826 (-) | False | XLOC_006510 |
| TCONS_00012618 | lncRNA | upstream | 1014004 | 13660732 ~ 13661533 (-) | True | XLOC_006512 |
| TCONS_00013766 | lncRNA | upstream | 1090814 | 13737542 ~ 13740560 (-) | True | XLOC_006514 |
| TCONS_00012605 | mRNA | downstream | 42059 | 12591508 ~ 12602920 (-) | True | XLOC_006503 |
| TCONS_00012604 | mRNA | downstream | 63591 | 12543634 ~ 12581388 (-) | True | XLOC_006501 |
| TCONS_00012603 | mRNA | downstream | 150404 | 12488863 ~ 12494575 (-) | True | XLOC_006500 |
| TCONS_00012598 | mRNA | downstream | 158903 | 12479264 ~ 12486076 (-) | False | XLOC_006499 |
| TCONS_00012596 | mRNA | downstream | 255231 | 12378074 ~ 12389748 (-) | False | XLOC_006498 |
| TCONS_00012610 | mRNA | upstream | 7247 | 12653975 ~ 12660318 (-) | False | XLOC_006505 |
| TCONS_00012612 | mRNA | upstream | 18138 | 12664866 ~ 12667220 (-) | True | XLOC_006506 |
| TCONS_00012613 | mRNA | upstream | 347123 | 12993851 ~ 13030851 (-) | True | XLOC_006508 |
| TCONS_00012614 | mRNA | upstream | 566839 | 13213567 ~ 13294872 (-) | True | XLOC_006509 |
| TCONS_00012617 | mRNA | upstream | 1013836 | 13660564 ~ 13662624 (-) | False | XLOC_006512 |
| TCONS_00012601 | other | downstream | 158987 | 12481378 ~ 12485992 (-) | False | XLOC_006499 |
| TCONS_00012597 | other | downstream | 255416 | 12378215 ~ 12389563 (-) | True | XLOC_006498 |
| TCONS_00012595 | other | downstream | 539085 | 12105778 ~ 12105894 (-) | True | XLOC_006496 |
| TCONS_00012589 | other | downstream | 670411 | 11974452 ~ 11974568 (-) | True | XLOC_006492 |
| TCONS_00012573 | other | downstream | 1079116 | 11565736 ~ 11565863 (-) | True | XLOC_006482 |
| TCONS_00012615 | other | upstream | 940568 | 13587296 ~ 13590570 (-) | True | XLOC_006510 |
| TCONS_00012616 | other | upstream | 997717 | 13644445 ~ 13644562 (-) | True | XLOC_006511 |
| TCONS_00012619 | other | upstream | 1023712 | 13670440 ~ 13670537 (-) | True | XLOC_006513 |
| TCONS_00012624 | other | upstream | 1737693 | 14384421 ~ 14384538 (-) | True | XLOC_006518 |
| TCONS_00012658 | other | upstream | 3661039 | 16307767 ~ 16307883 (-) | True | XLOC_006537 |
