RNA id: TCONS_00012638


Basic Information

Item Value
RNA id TCONS_00012638
length 666
lncRNA type retained_intron
GC content 0.50
exon number 4
gene id XLOC_006527
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 15682075 ~ 15702736 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAATCCTGGTAAAAGAACATGCCCTTATCCTGTCAGGATCAGGTTTCAGATAGTTCAGAATGTAAAAATTTAATGTTAGGTATGAATTTATTTGCTTGGCTCCTAATTTGTGTGCCCTGGCTTGTTTCCCATCTCAGGCCACCCCTTCATTATGACTGTGGGTTGTGTGGCTGGGGATGAGGAGACCTACGAGGTGTTCAAGGAGCTACTGGACCCTGTTATTCAGGACCGACATGGAGGGTACAAGCCAACAGACAAACACAAGACTGATCTAAACCCCAGTAACCTCAAGGGGGGTGATGACCTGGATCCCAATTACGTGCTGAGCTCTCGCGTCAGAACTGGCAGGAGTATCCGTGGATTCTGTTTGCCACCGCACTGCAGCCGTGGAGAGAGGAGAGCTGTAGAGAAGCTCTCAGTACAAGCTTTGGGTGCCCTGGCTGGGGATCTCAAAGGAAAATACTATGCCCTGAAGAACATGACAGAGGCAGAGCAGCAGCAGCTTATCGATGATCACTTCCTGTTCGACAAGCCTGTGTCTCCTCTGCTATTGGCCTCAGGGATGGCTCGTGATTGGCCTGATGCGAGAGGCATCTGGCACAATGACAGCAAGACATTCCTTGTGTGGGTGAATGAGGAAGACCATCTACGTGTCATCTCCATGC

Function

GO:

id name namespace
GO:0046314 phosphocreatine biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005615 extracellular space cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004111 creatine kinase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-902 Predicted to enable creatine kinase activity. Predicted to be involved in phosphocreatine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in extracellular space. Is expressed in central nervous system; liver; myotome; and pleuroperitoneal region. Orthologous to human CKB (creatine kinase B).

Ensembl:

ensembl_id ENSDART00000146069

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012632 lncRNA downstream 105341 15575137 ~ 15580152 (-) False XLOC_006526
TCONS_00013470 lncRNA downstream 107448 15575712 ~ 15578045 (-) True XLOC_006526
TCONS_00013469 lncRNA downstream 227869 15456676 ~ 15457624 (-) True XLOC_006525
TCONS_00013768 lncRNA downstream 703913 14950795 ~ 14981580 (-) True XLOC_006522
TCONS_00012627 lncRNA downstream 776524 14906407 ~ 14908969 (-) True XLOC_006520
TCONS_00013769 lncRNA upstream 563660 16260651 ~ 16261573 (-) True XLOC_006536
TCONS_00013770 lncRNA upstream 1171389 16868380 ~ 16879070 (-) True XLOC_006538
TCONS_00013771 lncRNA upstream 1797306 17494297 ~ 17530435 (-) False XLOC_006540
TCONS_00013772 lncRNA upstream 1824014 17521005 ~ 17526496 (-) False XLOC_006540
TCONS_00013773 lncRNA upstream 1824014 17521005 ~ 17530405 (-) False XLOC_006540
TCONS_00012631 mRNA downstream 543213 15091264 ~ 15142280 (-) True XLOC_006524
TCONS_00012630 mRNA downstream 603469 15020822 ~ 15082024 (-) True XLOC_006523
TCONS_00012628 mRNA downstream 756257 14915344 ~ 14929236 (-) False XLOC_006521
TCONS_00012629 mRNA downstream 759175 14922716 ~ 14926318 (-) True XLOC_006521
TCONS_00012626 mRNA downstream 776829 14902574 ~ 14908664 (-) False XLOC_006520
TCONS_00012639 mRNA upstream 65287 15762278 ~ 15793585 (-) False XLOC_006528
TCONS_00012640 mRNA upstream 65288 15762279 ~ 15793585 (-) False XLOC_006528
TCONS_00012641 mRNA upstream 66289 15763280 ~ 15799391 (-) True XLOC_006528
TCONS_00012642 mRNA upstream 156686 15853677 ~ 15865335 (-) True XLOC_006529
TCONS_00012643 mRNA upstream 221458 15918449 ~ 15928934 (-) False XLOC_006530
TCONS_00012624 other downstream 1300955 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 2014956 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 2040931 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 2094923 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012601 other downstream 3199501 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012658 other upstream 610776 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012667 other upstream 2077666 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 2947899 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 2952501 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 3018319 18715310 ~ 18715426 (-) True XLOC_006554

Expression Profile

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