RNA id: TCONS_00012639


Basic Information

Item Value
RNA id TCONS_00012639
length 2668
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_006528
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 15762278 ~ 15799391 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGGGAAGGGAAGGGGAGGGGCAGGAATGCGGTCCACGCCGATGTAATGCTTCAACTGATCTGAATGCCTGTTTGCCTTTGCCAGTATCACTGCAACTCTGCGATCCAGAAATTACTGGAGTGTTGTGCCGTGCAAAACATTTTACTCGCGTGGCTGATGGAAAAGGAGCCCCTTAAACATGTGCGCGAACGTTTTCGGCGCGTTGAAGAGCCTATTTGGGAAGCCATTTGATGGTGGTAAAAGGACAATGGATCATGGCGGTCAGCAGTCTCAGACTCAGCAGATGCCAGGACCCTTCGCAGCTTTTGCAGGACAGCAGGGCCCATATCCTGGGCAGCATCCAGCTTTGTCACGGCTGGATGAAGTGCAGAAGGAGATCGCCTCACTGGGCCCTCAGGTGTGCTCTTACAGCGGCCTGCAGAACAACAGAGAATATAAAAGATTGGAGCGTGAGCTGACCCGATTACTGCTGGAGGTTGATAAGGTGGAGACAGAAGGTCGTCCGGAGCTCCAGCTGCCTCGTAAGCGTGCAGCAGGAGAGGTAGAGGGTCTGCTCCACTACCTGGAGAGCAATGCCACACATCCATCCCGGCTGGCCATTGAGGAACTGACCCAAGAGGCGAGGAACCTGTTGAATGAAGGGGTTGTGATGCCCTTTCGTCAGGGCCAGGCTCTAGATGCCTTTGAAATCAGTGAGGAGCTGGTGGAGGCTGTGCAGGATGTGGCCATGCGGCTTGCGCAAGTAAAGACGGGAGGAAGTGTACCACTCAGGAAAGCCCGTTATAAGGCGCTGACACGGATCTGTGCCGTACAGGAGATACTGGAGGGTCGTGTACAAACTCATACGCTGGCACTACCACTGTCGGATGACACACATGAGGCTGTGCAGGGTATTAATGAAGTAATGTCGCAGGTGAGTGGGGCCCGCTGCCAGGAAGTGGCTCTGCTGATGGGTCTGAGTGGGCGTGACAGCTGTGCCCACTTAGCGAGGATCCTTACAGAACTGCTGGTTAAACTTGATGCCCTGGATGTGTCTAGTAATGCTGCTGTGAGGAACTACAGAAAACAAGTGGTGGAGGAGATCAACGGCCTGTTGAAACATCTTGACCTGGAGGGTGAAGGAGAAGACACACACAGgtaTGATCTAGCACAGAATGACTCTATTCGTGAAATTGAGGCTATCAGGGGTCGTGTGTCAGTGCTGCGAGAAGAGGTGCTTCGGCATGGAGCTTCTGGACAGGGAATAGAGCTGCAGGGTCTCCTTAACCATCTGGACCAGGTAAATACAGGCCGAAATCCCTGCATCCGGGAGGCGCGACGCAGGGCTGTGCTAGAGGTGCAGGCGCTCATCACCTTCCTAGACCTCTGGGAAGCACTAGGACGACGTAATCCAGGGCCAGATGAACCTCCACCTCATGCAGCCGTGTGGCGAGTGCTGGGCAGTTTGTGTGATCTGCAGGCCCAGGTGTTGGGCTTCGATGGCAAAAGGGCCGACAAGAGCTACATGGTGTTGGAGGAGCTACTGACCAAACAACTTCTGGCTCTTGACGCTGTGGACCCTCAGGGTGACCAGGGGACCAAAACTGCCCGTAAGCAAGCTGTTAAACATGCCCAGAATATTCTTAGTTATCTGGATATGAAGACGGATGAGTGGGAGTACTGAGTGGATAAGACACTGGATTGCCCTGATTAAAGATCAGCAAATGTGCAACATATTAGGACTAGCACGGCCTTGGCAACCATACAGGCCATGGGTGaaatttttaatttgtatataaAAGACTGTGTATCGCCATGGGTAGCGACACTGTTACCCATGATGCACTGTACCTGCTGCTTTTGTTGGCCCTTTACTGGTCCCTGAAAACAGCCATCTTCTGGCAGGAGTTGCAGTTACTACTGCATATGAAGCTTTTGTTTTCCTGACAATAATCCATGATCTTTTTGGTTGAATCTGAGCTGTTGGTTGGTGTGGTGTGGTGCTAAACCCTGTTCTGCTGCCAAAATCTGCTTTCTGCTTTACCACATGCCTGTGTGGAGCACATGTTGTCTTTTTCGCAGTGTGAACACGTCAGCGCTTCAGTCTTGTCAACTATAACCCATTTGGTAACACATCATTCCCTGATTTGACCACAACATACTCATAATGAGGCCATTTCCAGATAATTacagtgatagttcacccaaaaattaagatTTACTCACCATTCCAAACACACCCAAACAAAAGTTTCCTCTGGTTTTTGAACACTAAAGACAATATTTTGACAGCTGAAAACCTAAAACCATCAAATTCCATAgtggaaaaaacaaataatagaacTTATAGTCAATGGTAAGAGAATATCcagattattatatattttttttcaaaatgatttcTTTTGCAATCAactgttaaaaaagaaaacacttgcAACAATATTTACAACAAGAAAAAGAacagttttcagttttgggtgaaccatcactttaaaAGGTCAGACAAGCTTAGTGTTCATAGCTGCAGTTAGAACCCGAGCTCTTCATATATAAACCCTGCATATAAACAACGACTGACCCCACATGTTGGAACATTATTTTTGGTTTTCAAGCAACTTCTACATATAACCCCCAGTTTAATTTAAGGACATTGCATTGAAATAAACACTGCTTTGCAATGTCA

Function

GO:

id name namespace
GO:0090083 regulation of inclusion body assembly biological_process
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0050821 protein stabilization biological_process
GO:0005829 cytosol cellular_component
GO:0005575 cellular_component cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000774 adenyl-nucleotide exchange factor activity molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-050913-58 Predicted to enable adenyl-nucleotide exchange factor activity; chaperone binding activity; and heat shock protein binding activity. Predicted to be involved in negative regulation of protein ubiquitination; protein stabilization; and regulation of inclusion body assembly. Predicted to be active in cytosol; membrane; and nucleus. Orthologous to human BAG5 (BAG cochaperone 5).

Ensembl:

ensembl_id ENSDART00000145914

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012638 lncRNA downstream 65287 15685493 ~ 15696991 (-) True XLOC_006527
TCONS_00012632 lncRNA downstream 182126 15575137 ~ 15580152 (-) False XLOC_006526
TCONS_00013470 lncRNA downstream 184233 15575712 ~ 15578045 (-) True XLOC_006526
TCONS_00013469 lncRNA downstream 304654 15456676 ~ 15457624 (-) True XLOC_006525
TCONS_00013768 lncRNA downstream 780698 14950795 ~ 14981580 (-) True XLOC_006522
TCONS_00013769 lncRNA upstream 467066 16260651 ~ 16261573 (-) True XLOC_006536
TCONS_00013770 lncRNA upstream 1074795 16868380 ~ 16879070 (-) True XLOC_006538
TCONS_00013771 lncRNA upstream 1700712 17494297 ~ 17530435 (-) False XLOC_006540
TCONS_00013772 lncRNA upstream 1727420 17521005 ~ 17526496 (-) False XLOC_006540
TCONS_00013773 lncRNA upstream 1727420 17521005 ~ 17530405 (-) False XLOC_006540
TCONS_00012635 mRNA downstream 59542 15682828 ~ 15702736 (-) False XLOC_006527
TCONS_00012637 mRNA downstream 59606 15685437 ~ 15702672 (-) False XLOC_006527
TCONS_00012636 mRNA downstream 62194 15685437 ~ 15700084 (-) False XLOC_006527
TCONS_00012633 mRNA downstream 62217 15682075 ~ 15700061 (-) False XLOC_006527
TCONS_00012634 mRNA downstream 62218 15682080 ~ 15700060 (-) False XLOC_006527
TCONS_00012642 mRNA upstream 60092 15853677 ~ 15865335 (-) True XLOC_006529
TCONS_00012643 mRNA upstream 124864 15918449 ~ 15928934 (-) False XLOC_006530
TCONS_00012644 mRNA upstream 130791 15924376 ~ 15929402 (-) True XLOC_006530
TCONS_00012646 mRNA upstream 163923 15957508 ~ 15982707 (-) False XLOC_006531
TCONS_00012645 mRNA upstream 163923 15957508 ~ 15982707 (-) False XLOC_006531
TCONS_00012624 other downstream 1377740 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 2091741 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 2117716 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 2171708 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012601 other downstream 3276286 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012658 other upstream 514182 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012667 other upstream 1981072 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 2851305 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 2855907 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 2921725 18715310 ~ 18715426 (-) True XLOC_006554

Expression Profile

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