RNA id: TCONS_00012646


Basic Information

Item Value
RNA id TCONS_00012646
length 2254
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_006531
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 15957508 ~ 15994472 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTTTAGGAAGAGACAGCCCGATGAATGCTAATGAAGGCGGAGAGGATCAAGATGAGGCCATGCCTGTTCCTGAAGACTTGTCAGCAAGCACTGGCCTCCAACACAACAATCGCACAGATAAACCACTGGGTGAAAGGCCATTCCAGTGCAATCAATGTGGTGCTTCATTCACTCAGAAGGGTAACCTGCTCCGACACATCAAACTTCACTCTGGCGAGAAACCTTTCAAATGTCACCTGTGCAACTATGCTTGCCGCCGCAGAGACGCTCTCACTGGACATCTGCGCACTCATTCGGTTGGAAAGCCCCATAAGTGTGCATATTGCGGACGCAGTTACAAGCAGCGGAGCTCACTGGAGGAACATAAGGAGAGATGTCACAACTACTTGCAGTGCATGGGCCTTCAGAACAGCATTTATACAGTGAAGGAAGAGAACAGCCAGAATGAGCAGAGGGAGGACATGCCTGCATCTGAGAGGGCCTTGGTGCTAGACAGgatagctaacaatgtagctaaGCGTAAGAGCTCTATGCCACAGAGGTTTGTGGGAGAGAATCGTCTGTCAGAGCTATCTTTCGAGAGTGGCTCAGGTGAGCTGATGCAGCCCCATGTGATTGATCAGGCCATCAACAGTGCAATTAGCTATCTGGGTGCAGAGTCCTTGCGGCCTCTGGTTCAGACCTCTCCTGGGTCCGCCGACATGGTGGTCAGCCCTCTATACAACCTGCACAAGTCACAAACAGCTGAAGGCAATGGTGTTTCTGCTAAAGACAGCGCCGCAGAGCACCTTCTCCTACTCTCTAAGTCCAAATCCGCCTCTGTTGACAAAGACGGTTCCCCCAGTCCCAGCGGGCAGGATTCCACTGACACTGAGAGCAACAACGAGGAGCGTTCGGCCGGGGTAAGCGGAACAGCAGCCACAGGTGGTCTCATCTACCTGACCAACCACATGGCTCCAGGTATGAGAAATGGAGGCCTGCCAGGGGTAAAGGAAGAACAACACCGGCAGTTTGAGGCTTTGCGAGCAGCAGGAATGGATTTGAGTATAGCGTCATCAGAAGGATTTAAGGTGCTAAGTGGAGATGGAGAAGAATTGAGGGCGTACCGCTGTATCcactgcagagttttgttcctgGATCATGTCATGTACACCATCCACATGGGCTGTCATGGCTTCCGAGACCCCTTTGAGTGCAACCTATGCGGGTACCGCAGTCAGGACCGTTATGAGTTCTCATCGCACATCACACGTGGAGAGCACCGCATCTGAGTTAACACACAGAGTCATTCCACAAACACTTGGCCAAATGTTCACAGCATACTGCTGTCCAACATGAAACAATACATCGTTCCTGAATTTTTTTAGACACTGTTCAAATatagaatttttcttttttgaacatTGGTTGATTTGaacatatgtatatacagttaaccTATATATTTCACTGTCTTGTCTATTTTTATACAATGGTGTACGTAAACCACTAGGGATTTAAAGAAGGATAAAGAACTGTAACTGAAAAGTTTTTTTGAAACGGCAACATTTATAAAGGATTGCATCTGAAATTGGTGTTTTTATTTGAGCCAAAGTTTCTGATATACTACTAGTGAAACAATGCATATCATTAACAATGatactattaaatattatttgcaaGAGGGGATTTAAGCTCATCTCATGTATCTCTCTCATGTGTTTCTACTGTGTTCCAACAGTTTGTTATAATGAAACATATATATATGGCAATACATGTTGTAcctgtctgtttatttgtttttcgcttgcttttttggctttttttttattaatgtatttaaatatgcagTTTGCCAGCGTTATACTATGTCATCTTAGAATATATATGcttgcaaaaataataaaagatattttacatttgtttacattcaggttttttttttttcatttgttcccTTTTTCCGATCTGTCAGATCTTCAAAATTCTAAACACAATTAACACAACATATCTGTTGTGACCACACCTTTAAcacaaaatgtattgttattttgACTCAATATTCAGATAATTCACAGGTTTCTCTATAAtgcttttttttccacaaatggcgacaaagtggctcagtggttagcactgtcgcctcaaagcaagaaggtcgctggtcgagtcccgactgagtcagttggcatttctgtgtggagtttgcatgttcctctatgttcgcataggtttcctccagtttcccccaaagtccaaagacatgcaggt

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030183 B cell differentiation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-304 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within B cell differentiation and T cell differentiation in thymus. Is expressed in several structures, including hematopoietic cell; hematopoietic system; immune system; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma and common variable immunodeficiency. Orthologous to human IKZF1 (IKAROS family zinc finger 1).

Ensembl:

ensembl_id ENSDART00000186911

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012638 lncRNA downstream 260517 15685493 ~ 15696991 (-) True XLOC_006527
TCONS_00012632 lncRNA downstream 377356 15575137 ~ 15580152 (-) False XLOC_006526
TCONS_00013470 lncRNA downstream 379463 15575712 ~ 15578045 (-) True XLOC_006526
TCONS_00013469 lncRNA downstream 499884 15456676 ~ 15457624 (-) True XLOC_006525
TCONS_00013768 lncRNA downstream 975928 14950795 ~ 14981580 (-) True XLOC_006522
TCONS_00013769 lncRNA upstream 277944 16260651 ~ 16261573 (-) True XLOC_006536
TCONS_00013770 lncRNA upstream 885673 16868380 ~ 16879070 (-) True XLOC_006538
TCONS_00013771 lncRNA upstream 1511590 17494297 ~ 17530435 (-) False XLOC_006540
TCONS_00013772 lncRNA upstream 1538298 17521005 ~ 17526496 (-) False XLOC_006540
TCONS_00013773 lncRNA upstream 1538298 17521005 ~ 17530405 (-) False XLOC_006540
TCONS_00012644 mRNA downstream 28106 15924376 ~ 15929402 (-) True XLOC_006530
TCONS_00012643 mRNA downstream 28574 15918449 ~ 15928934 (-) False XLOC_006530
TCONS_00012642 mRNA downstream 92173 15853677 ~ 15865335 (-) True XLOC_006529
TCONS_00012641 mRNA downstream 158117 15763280 ~ 15799391 (-) True XLOC_006528
TCONS_00012639 mRNA downstream 163923 15762278 ~ 15793585 (-) False XLOC_006528
TCONS_00012653 mRNA upstream 44852 16027559 ~ 16066997 (-) True XLOC_006532
TCONS_00012654 mRNA upstream 167947 16150654 ~ 16191674 (-) True XLOC_006533
TCONS_00012655 mRNA upstream 236375 16219082 ~ 16222388 (-) False XLOC_006534
TCONS_00012656 mRNA upstream 236375 16219082 ~ 16226312 (-) True XLOC_006534
TCONS_00012657 mRNA upstream 247849 16230556 ~ 16257848 (-) True XLOC_006535
TCONS_00012624 other downstream 1572970 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 2286971 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 2312946 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 2366938 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012601 other downstream 3471516 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012658 other upstream 325060 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012667 other upstream 1791950 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 2662183 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 2666785 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 2732603 18715310 ~ 18715426 (-) True XLOC_006554

Expression Profile

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