Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00012650 |
| length | 1639 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 7 |
| gene id | XLOC_006531 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 15957508 ~ 15994472 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030183 | B cell differentiation | biological_process |
| GO:0033077 | T cell differentiation in thymus | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-304 | Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within B cell differentiation and T cell differentiation in thymus. Is expressed in several structures, including hematopoietic cell; hematopoietic system; immune system; mesoderm; and nervous system. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma and common variable immunodeficiency. Orthologous to human IKZF1 (IKAROS family zinc finger 1). |
| ensembl_id | ENSDART00000050481 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00012638 | lncRNA | downstream | 261191 | 15685493 ~ 15696991 (-) | True | XLOC_006527 |
| TCONS_00012632 | lncRNA | downstream | 378030 | 15575137 ~ 15580152 (-) | False | XLOC_006526 |
| TCONS_00013470 | lncRNA | downstream | 380137 | 15575712 ~ 15578045 (-) | True | XLOC_006526 |
| TCONS_00013469 | lncRNA | downstream | 500558 | 15456676 ~ 15457624 (-) | True | XLOC_006525 |
| TCONS_00013768 | lncRNA | downstream | 976602 | 14950795 ~ 14981580 (-) | True | XLOC_006522 |
| TCONS_00013769 | lncRNA | upstream | 266232 | 16260651 ~ 16261573 (-) | True | XLOC_006536 |
| TCONS_00013770 | lncRNA | upstream | 873961 | 16868380 ~ 16879070 (-) | True | XLOC_006538 |
| TCONS_00013771 | lncRNA | upstream | 1499878 | 17494297 ~ 17530435 (-) | False | XLOC_006540 |
| TCONS_00013772 | lncRNA | upstream | 1526586 | 17521005 ~ 17526496 (-) | False | XLOC_006540 |
| TCONS_00013773 | lncRNA | upstream | 1526586 | 17521005 ~ 17530405 (-) | False | XLOC_006540 |
| TCONS_00012644 | mRNA | downstream | 28780 | 15924376 ~ 15929402 (-) | True | XLOC_006530 |
| TCONS_00012643 | mRNA | downstream | 29248 | 15918449 ~ 15928934 (-) | False | XLOC_006530 |
| TCONS_00012642 | mRNA | downstream | 92847 | 15853677 ~ 15865335 (-) | True | XLOC_006529 |
| TCONS_00012641 | mRNA | downstream | 158791 | 15763280 ~ 15799391 (-) | True | XLOC_006528 |
| TCONS_00012640 | mRNA | downstream | 164597 | 15762279 ~ 15793585 (-) | False | XLOC_006528 |
| TCONS_00012653 | mRNA | upstream | 33140 | 16027559 ~ 16066997 (-) | True | XLOC_006532 |
| TCONS_00012654 | mRNA | upstream | 156235 | 16150654 ~ 16191674 (-) | True | XLOC_006533 |
| TCONS_00012655 | mRNA | upstream | 224663 | 16219082 ~ 16222388 (-) | False | XLOC_006534 |
| TCONS_00012656 | mRNA | upstream | 224663 | 16219082 ~ 16226312 (-) | True | XLOC_006534 |
| TCONS_00012657 | mRNA | upstream | 236137 | 16230556 ~ 16257848 (-) | True | XLOC_006535 |
| TCONS_00012624 | other | downstream | 1573644 | 14384421 ~ 14384538 (-) | True | XLOC_006518 |
| TCONS_00012619 | other | downstream | 2287645 | 13670440 ~ 13670537 (-) | True | XLOC_006513 |
| TCONS_00012616 | other | downstream | 2313620 | 13644445 ~ 13644562 (-) | True | XLOC_006511 |
| TCONS_00012615 | other | downstream | 2367612 | 13587296 ~ 13590570 (-) | True | XLOC_006510 |
| TCONS_00012601 | other | downstream | 3472190 | 12481378 ~ 12485992 (-) | False | XLOC_006499 |
| TCONS_00012658 | other | upstream | 313348 | 16307767 ~ 16307883 (-) | True | XLOC_006537 |
| TCONS_00012667 | other | upstream | 1780238 | 17774657 ~ 17860347 (-) | False | XLOC_006543 |
| TCONS_00012681 | other | upstream | 2650471 | 18644890 ~ 18645005 (-) | True | XLOC_006551 |
| TCONS_00012682 | other | upstream | 2655073 | 18649492 ~ 18649682 (-) | True | XLOC_006552 |
| TCONS_00012685 | other | upstream | 2720891 | 18715310 ~ 18715426 (-) | True | XLOC_006554 |
