RNA id: TCONS_00012653


Basic Information

Item Value
RNA id TCONS_00012653
length 4143
RNA type mRNA
GC content 0.38
exon number 9
gene id XLOC_006532
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 16027559 ~ 16066997 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGATGATTACACCTGTGGCTGCCATCTGCATAAAACCACATACCCAGCCACGTCTACAAGAGAGATGGGgtatttatgaaaatatattcTATTCATTTCTTAATTGTTTGCTTTTATGAATCATTAATGGGCGAGAAAGGAGAAACTTATCGTGTAAGACTTCTCAAGGCTCCTTGTGGGAATTCAAAAGAAGTGAGCAGGTGGCTGTGCAGACGCATGAATCTGCCCTGTGAGAAAGGTCCAGAGGGAAGGTATGACTTTGAAAGCATGGCGGAGACAGACAGACGTGCATTCTCCAAATTCAATCCTGCAGCCAAGCAACCAGCTGAAAATGCGGCTCTGGCCCCTCTGCGTGATGGTGTGTCTCTAATAGATCATTGCTCTGGTCAACTGAGTACAGGGGCACAGGTGCATCTGGAGGTAACCAGCAGAACTCCATTCGTCAATAGGGTTTATCCTACGTCTGATCTGTGGGTTCCGGCAGGTGCACGAGACAGGCCTCAAACTCCACCAACCCGACCTTCAGCTTTGATATATGACAATTCTGAACACAAGAGGTGGAACTCGAGGATGAGACCAGAGGCAGCACTGAAAGCAAAACTTGAAGGTTGGACAAATGCACAGAGCATTAAACAACCCTCTCAGGACAGCCATGAAATAAATGCGGATCCGGATCCATCTGTTCTTTTTGATAGCAAAGCAACAGCAGCTCAACAATATATCTACACTTCTGCAACCCAAAGAGGTTATGAGGATGTGGCCTGGGACTCGAAGTTGCCTCCTCGTCACGAACCACCCATATCTTCTCTGGAAAAAATGGCTGACCCTGTGAGCCAGTGCTTTGTGCTAAAGCGATACCATAGTAGACCTGAGCTTTGGCAGGCCATTGGATCCCATTGGAGCAAACACCAGTTACGTGGCACATTTAACCCAAAGAAACCCATTAGCTTCACCAGTTCATGCCCAAAATCAGGCCATATTCCTTTATACTGCGGTACAGTGGGCTCTGAGAACATGGACAATGTGAACATCCCAGAAGAAGACTTCACCCCTCTGACAGTTTTGAGGAGCAAAGTACCTCCTCATACCCTTACCAGCTATCGAACTACTATTCCTGGTTACACTGGAAAAGCCCGGTTTGATAGAGCACAGACTTCAGAGGCCAGTCTGCCTTCTTTGCTTTGTACTCCACAAACAGCAGGGAGCCTTCCTGGCACATGGAACTCCTCATTCTATGGACGCAAAGCTCCACTATCAAGTATGATCACTACTGTCCCTCCAGGAAACCCTTACCTTCATTCCAAAGCCCCGGTACTTTCCATGAAATAACTAAGAGGAAGAGTGTTCttttacaaagaaaaataaatgatgaagAAATATGGGAAATGAGAGTCTTCCTTTTTATAAAATCCAATCTGTGTTTGTGAATAGATCTATAATGATGCTATGTCAATGACTGATTCTCTAAGCTCTGAGTAATGATGAGCATAATTTCCCTTGATTTAGATGAGTGCTTCTGTAAATGTGGAGGTTGTGCCATTGTCTTAatcttcgtgtgtgtgtgtgcgtgtgcgtgtgtgggtTTACATATTTGACTATATGTGTGTCCATGCGGATAAATGAGTGAATCATTTTCTCACAGATCCTCTTTTGCAAGCGTTTATTGCTTTGGCACATCCAAAAAGCACTTGCAAACTGATTGCAAAAAGAGATATTTTGTGGTTATGTAGCAATGGCATTGCAAATAAAACTTTGTTCGTTATGatcttaaaagaaaacaaaagacatGCATTTCTGAAATGTTCTAGTTTTGCAGCCCAAGAACTGCGGTTTGGAGAATAAATGAAAGAGCACCAATGAAGCTTCACCTGCTTACAGGAAATAGGTTTCCTGTTTCCCCCTTTGTCAACTCTACGCTTCTGTGTCAAAAACAGTCTGCTCTGGAAGCATCCAGATGAAAAAACCTTCAACTAGTAAGACTTaaaatttatttatgaatttaaaaaaacacttaaaagcaGTCAAATCCATTTATataagttttaaaatgatttcacaACATCCTTGGTGTACTGTTGAGGGTTTTTTGACAGTAACCTTGCTTGGTAAATCAGCTAGTGTTTGCGATACTCTGAtaagaaataaaagtaaatacaacagaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtccagaTAAACTTAATATCAATTCTGTATTActgcaaatgtgtgtaaatgtcaaACAAACAAGTAGTCAATATTTTAGAGACttattctttcattctttttctttcggCTGAGTCCTTTATTTTTCATGGGTgtgcctcagcggaatgaactgccaactattccaaacgaacatgcacactccatacaaaaaaacaggctcattctgaaaatgtatctctatatacatttttagagaccactaaatacatcccaggagctactttttttgcagttcttgttttcacgaatccaccagaggccgctgtgtaaacttttttaaatgtcatatttttctcgtgtgaatccaccagaggtcactctCAACTAACTAactagactgactgactgaccgattgactgatccccccaccctcctccttctctaaaaccaaccaatagggtatatgcggaagtatgcagaaggacttaAAATTTGTAAGTAACCTAGGTTAAGTGTTTCCGGTCAACTGTTTGCCATTACAAAATCAGtgcgtctgttttttttttttttttatatcagcgATCTCCTCTGGCTGAGTAATATCCAATATAacgtgggtctcagattgtacaaaaagcactgcatgaaattacatttttagctGCCATGTCTTCAAAataagaacatttattttaccccagtatattcaatggagcttttgcACTAGCCTGATAATCCTGACAGGCCTGTGCGTGTAAACGGCTTTTCTtcttgttttacacttgaacaacaaaataaatgccaaagtctattcaacttaatgtattgtaattacattacaacattgatgctgtaaaaagaatcgtataaaatgaaaaaagtcacattaacccttaaagaccgaatCAGCCGCCCGCGGCTATAAATAAGtcttaagggctctattttgacggtccatgcgcagagcgcaaaacgcagggcgcaaaacgcagggcgcaaacgctttcagggcgtgtcaggacgcgtttttgctaatttaaggatgggaaatctgccttgcgctgcggcgcatgttctaaaagggttgagtttatttttttaatgagttataggtgtgttttgagaataaaccaattagaatctcatctcaAATTCAGAGATCtgagtcagctgcgtcgcaccaagagcgcattcgctatttactggacgcaaagtaagtctaagtggaaaaaatgagcatttcacaagcaaacagttaacagttttttaacagaaaactgttaaacagagcatctactgcgtgagaatgagagataatggaactactttcactttcgctcttggatagggaaacctttagcacagacatcaattagtctataaataaataattttgtttgttaagctcaaatattcgtttcaaaactattcctacattcagttctaatttctagcaaacgaataaatgaataataatagcaaaatgtgctcaaaaacctgagttatatcctaaaacacatgccattgccccatatggtctaagacaggtgggcaaatctaagcttgtttttaataaaacaaatataaatatggatataataaataatactgctaataataataacattatacaaaagcaaattgttatgaatgaactgaaaaagcctcccgagatgaagaagacataaaagcaggggtttttcatatttatgtaggctagaaaattattttaatcctttatatttatattctatatctattcttattataaactatatatatccttaatatttacattttttcatatgtaaagattagtgctgtcaatcgattaaaaaaaattaactaattaatcgcactttttttaaaaaattaatcgcatttaaaatattgaaact

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184790

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012638 lncRNA downstream 330568 15685493 ~ 15696991 (-) True XLOC_006527
TCONS_00012632 lncRNA downstream 447407 15575137 ~ 15580152 (-) False XLOC_006526
TCONS_00013470 lncRNA downstream 449514 15575712 ~ 15578045 (-) True XLOC_006526
TCONS_00013469 lncRNA downstream 569935 15456676 ~ 15457624 (-) True XLOC_006525
TCONS_00013768 lncRNA downstream 1045979 14950795 ~ 14981580 (-) True XLOC_006522
TCONS_00013769 lncRNA upstream 193654 16260651 ~ 16261573 (-) True XLOC_006536
TCONS_00013770 lncRNA upstream 801383 16868380 ~ 16879070 (-) True XLOC_006538
TCONS_00013771 lncRNA upstream 1427300 17494297 ~ 17530435 (-) False XLOC_006540
TCONS_00013772 lncRNA upstream 1454008 17521005 ~ 17526496 (-) False XLOC_006540
TCONS_00013773 lncRNA upstream 1454008 17521005 ~ 17530405 (-) False XLOC_006540
TCONS_00012647 mRNA downstream 33087 15957882 ~ 15994472 (-) False XLOC_006531
TCONS_00012650 mRNA downstream 33140 15958182 ~ 15994419 (-) False XLOC_006531
TCONS_00012651 mRNA downstream 33140 15958182 ~ 15994419 (-) False XLOC_006531
TCONS_00012649 mRNA downstream 33140 15958182 ~ 15994419 (-) False XLOC_006531
TCONS_00012648 mRNA downstream 33140 15958182 ~ 15994419 (-) False XLOC_006531
TCONS_00012654 mRNA upstream 83657 16150654 ~ 16191674 (-) True XLOC_006533
TCONS_00012655 mRNA upstream 152085 16219082 ~ 16222388 (-) False XLOC_006534
TCONS_00012656 mRNA upstream 152085 16219082 ~ 16226312 (-) True XLOC_006534
TCONS_00012657 mRNA upstream 163559 16230556 ~ 16257848 (-) True XLOC_006535
TCONS_00012659 mRNA upstream 855708 16922705 ~ 17464362 (-) False XLOC_006539
TCONS_00012624 other downstream 1643021 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 2357022 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 2382997 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 2436989 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012601 other downstream 3541567 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012658 other upstream 240770 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012667 other upstream 1707660 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 2577893 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 2582495 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 2648313 18715310 ~ 18715426 (-) True XLOC_006554

Expression Profile

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