RNA id: TCONS_00013769


Basic Information

Item Value
RNA id TCONS_00013769
length 835
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_006536
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 16260651 ~ 16261573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAAGTAAACACTGTAGCACTTCAGGCCGACGCTTTCAACTGTCAAATAAGTTAGCAAGCTGTTCATTTTACGTCCAATTCAAAAGGTATTTAAGTACATTTGATGGCTTACAAAAAGACAGTCATACACGAGATTAAGCAGCAACGAATGCAGGTTTTTAACGTTACCACATGAAGAAATTCAAGGCACCTTTTACCTTTAATCCGTTTAAATTCCTGATCTATCAGAGCCTGCTGATCAACGCCGTACCCGTAGTAGTGTCCAAAACTCTTAAAAACATCAAAAGTGCATAAGTCCTGAAAGTCTTGCAAAGACCGAGTATCCATTTTTGCTCAGTCTGAAAGTCCAGAGAGAGCCCTCCTTCCCGAATTTATGACGAATAAAGGGGAGTTTCACTGAAGTCCTGTGACGTTTCTGGAGCACGTCTGGTGAATACAGAGGGAAGTTATCAAAAATTGAATAGAGAATAACTGATCACACGTTATCTTGAGACATAATTTTCACTGCAAATATTTGACACTATTGATCAAAATAGTAGGGAGAGTAGGTTGGTGTTGAAAGAAATGAATGCTTTTATCAGATTCTCGCGCTTCAGTTAATccttcatcaaataaaaaaaaacctgtacagcttctacaaaatattaagcagcacaactgtttaaCTTCAGACATTAGGAAGATTGATTTCAAAAAgattatgtgacactgaagactagagAATGGTTTACATTGAAGACTAGTGTAATGATATTAATCTTTGTCATCACAGGAATAAAGTGcattctaaaacatttaaaatagaaatcaatcaatcaatcaatcaatcaata

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012638 lncRNA downstream 563660 15685493 ~ 15696991 (-) True XLOC_006527
TCONS_00012632 lncRNA downstream 680499 15575137 ~ 15580152 (-) False XLOC_006526
TCONS_00013470 lncRNA downstream 682606 15575712 ~ 15578045 (-) True XLOC_006526
TCONS_00013469 lncRNA downstream 803027 15456676 ~ 15457624 (-) True XLOC_006525
TCONS_00013768 lncRNA downstream 1279071 14950795 ~ 14981580 (-) True XLOC_006522
TCONS_00013770 lncRNA upstream 606807 16868380 ~ 16879070 (-) True XLOC_006538
TCONS_00013771 lncRNA upstream 1232724 17494297 ~ 17530435 (-) False XLOC_006540
TCONS_00013772 lncRNA upstream 1259432 17521005 ~ 17526496 (-) False XLOC_006540
TCONS_00013773 lncRNA upstream 1259432 17521005 ~ 17530405 (-) False XLOC_006540
TCONS_00013774 lncRNA upstream 1259432 17521005 ~ 17530536 (-) True XLOC_006540
TCONS_00012657 mRNA downstream 2803 16230556 ~ 16257848 (-) True XLOC_006535
TCONS_00012656 mRNA downstream 34339 16219082 ~ 16226312 (-) True XLOC_006534
TCONS_00012655 mRNA downstream 38263 16219082 ~ 16222388 (-) False XLOC_006534
TCONS_00012654 mRNA downstream 68977 16150654 ~ 16191674 (-) True XLOC_006533
TCONS_00012653 mRNA downstream 193654 16027559 ~ 16066997 (-) True XLOC_006532
TCONS_00012659 mRNA upstream 661132 16922705 ~ 17464362 (-) False XLOC_006539
TCONS_00012660 mRNA upstream 1104319 17365892 ~ 17464654 (-) True XLOC_006539
TCONS_00012661 mRNA upstream 1452723 17714296 ~ 17729474 (-) False XLOC_006542
TCONS_00012662 mRNA upstream 1452873 17714446 ~ 17723417 (-) True XLOC_006542
TCONS_00012663 mRNA upstream 1490293 17751866 ~ 17860435 (-) False XLOC_006543
TCONS_00012624 other downstream 1876113 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 2590114 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 2616089 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 2670081 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012601 other downstream 3774659 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012658 other upstream 46194 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012667 other upstream 1513084 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 2383317 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 2387919 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 2453737 18715310 ~ 18715426 (-) True XLOC_006554

Expression Profile

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