RNA id: TCONS_00013771


Basic Information

Item Value
RNA id TCONS_00013771
length 648
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id XLOC_006540
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 17494297 ~ 17530536 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCAGGATgagatatagagagagagagaatgtgaagTTACCGGAACATTGGCTGCTCAGTTGTCACTTCCCAAAAATTGCTGGAATAACTACTTGGCATTTATCTGTGAGTAAGTGGCCAATGGGGAAGCGGAGCTGGAGGataccaacatggggagaacatgctccacacagaaatgccaactgacccagccaggacttgaactgatgacctttttgctGTTTTATATGCCCACATATGCCCACTTGAGTAGCAATAGAAGCTTCCAGACCCCGCTCCATATGGCATGCAGCTGCAGATGACTGAACTGAGTGTCTATGAATTGTGGCTGTGCTCTTCAGAGAGGCGTCTGCTATCTGTGGGAGGTCATGGTACACAGACATCCTCTGAGTTCCACGCTGAAGTACGAGGGGTGATCGGGGTCAAGGAGACCATAGCAGGTGGAGGCTCCACCACCTCCCTCTGTGAAGGAGACATGTGGATGATGCATGGTGGGCAGATACCATGTACAGCCTTTGGGTCATTTTTCAAGTGCCTTTAAATTGCATGAAAGGCTGCAAatttgaaatgcattttaaaatgtaaatcatttgacGGACTGTTTTCAACACCATTCTGCTTTAAATTTGGGGTTtgtgatatttgttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013770 lncRNA downstream 615227 16868380 ~ 16879070 (-) True XLOC_006538
TCONS_00013769 lncRNA downstream 1232724 16260651 ~ 16261573 (-) True XLOC_006536
TCONS_00012638 lncRNA downstream 1797306 15685493 ~ 15696991 (-) True XLOC_006527
TCONS_00012632 lncRNA downstream 1914145 15575137 ~ 15580152 (-) False XLOC_006526
TCONS_00013470 lncRNA downstream 1916252 15575712 ~ 15578045 (-) True XLOC_006526
TCONS_00013471 lncRNA upstream 156049 17686484 ~ 17690664 (-) False XLOC_006541
TCONS_00013472 lncRNA upstream 160226 17690661 ~ 17693819 (-) True XLOC_006541
TCONS_00013775 lncRNA upstream 221437 17751872 ~ 17757280 (-) False XLOC_006543
TCONS_00012668 lncRNA upstream 292082 17822517 ~ 18011208 (-) True XLOC_006543
TCONS_00012676 lncRNA upstream 637026 18167461 ~ 18174826 (-) True XLOC_006546
TCONS_00012660 mRNA downstream 29643 17365892 ~ 17464654 (-) True XLOC_006539
TCONS_00012659 mRNA downstream 29935 16922705 ~ 17464362 (-) False XLOC_006539
TCONS_00012657 mRNA downstream 1236449 16230556 ~ 16257848 (-) True XLOC_006535
TCONS_00012656 mRNA downstream 1267985 16219082 ~ 16226312 (-) True XLOC_006534
TCONS_00012655 mRNA downstream 1271909 16219082 ~ 16222388 (-) False XLOC_006534
TCONS_00012661 mRNA upstream 183861 17714296 ~ 17729474 (-) False XLOC_006542
TCONS_00012662 mRNA upstream 184011 17714446 ~ 17723417 (-) True XLOC_006542
TCONS_00012663 mRNA upstream 221431 17751866 ~ 17860435 (-) False XLOC_006543
TCONS_00012664 mRNA upstream 222161 17752596 ~ 17943135 (-) False XLOC_006543
TCONS_00012665 mRNA upstream 225920 17756355 ~ 18011168 (-) False XLOC_006543
TCONS_00012658 other downstream 1186414 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012624 other downstream 3109759 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 3823760 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 3849735 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 3903727 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012667 other upstream 244222 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 1114455 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 1119057 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 1184875 18715310 ~ 18715426 (-) True XLOC_006554
TCONS_00012693 other upstream 2687055 20217490 ~ 20222092 (-) False XLOC_006562

Expression Profile

//