RNA id: TCONS_00013471


Basic Information

Item Value
RNA id TCONS_00013471
length 899
lncRNA type inter_gene
GC content 0.33
exon number 4
gene id XLOC_006541
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 17686484 ~ 17693819 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgacatcaaggaaacaggatcaaaagatcattcattatagaccgtttcatagGTCATTCTGTTCTCCTGGTTGTGAGGATGTGCAGAGGCtgtatttgtcagtgttaaaagactatccagacatacaagcagccgacaaagagttctggagcaggacagacagattggtgtacgctgatggtctgctgagaattctgctgagttgaagggatcctcctttcagacaacctctccaaagtacaataggactagGTTCCCACAACAAGGATTAGATTTGGCTACTGCAGTCCCGGTTTGGGCCAGCCTCACTTGTGAAGACTAAAGATGAAGACAACATACAAGAACAATTTCGAGGATGGCAACACACTTTTTATTCCACCTATTTATCCCCTTTTATGTGTAAGCAACTTTccacaagataaaacaaaagtaaatgacaggttatttcttttcattttgtctgttttcttggaacattgtacacaatttacaaccagttttatatatatataaaaacttctggagaaagtcttatttcttttatttcggctagaataaaaacagtttagaatttttttaaaaacattttaaggtcaatattatttgcccctttaagcaattttttttgactgtctacagaacaaaccatcattatacaataacttgcctaattaccctaacctgcctagttaattaacctagttaagcctttaaatgtcactttaggctgtatagaagtgtcttgaagaatatctagtcaaatactatttactcagttattagaaatgagttattaaaactattgtgattagaaatgtgttaaaaatatttctgttaaacagaaattaagggattatatatatatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0021536 diencephalon development biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1990399 epithelium regeneration biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0006518 peptide metabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007418 ventral midline development biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0030902 hindbrain development biological_process
GO:0021508 floor plate formation biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013774 lncRNA downstream 155948 17521005 ~ 17530536 (-) True XLOC_006540
TCONS_00013771 lncRNA downstream 156049 17494297 ~ 17530435 (-) False XLOC_006540
TCONS_00013773 lncRNA downstream 156079 17521005 ~ 17530405 (-) False XLOC_006540
TCONS_00013772 lncRNA downstream 159988 17521005 ~ 17526496 (-) False XLOC_006540
TCONS_00013770 lncRNA downstream 807414 16868380 ~ 16879070 (-) True XLOC_006538
TCONS_00013775 lncRNA upstream 61208 17751872 ~ 17757280 (-) False XLOC_006543
TCONS_00012668 lncRNA upstream 131853 17822517 ~ 18011208 (-) True XLOC_006543
TCONS_00012676 lncRNA upstream 476797 18167461 ~ 18174826 (-) True XLOC_006546
TCONS_00013474 lncRNA upstream 1319508 19010172 ~ 19016833 (-) False XLOC_006556
TCONS_00013473 lncRNA upstream 1319508 19010172 ~ 19016833 (-) True XLOC_006556
TCONS_00012660 mRNA downstream 221830 17365892 ~ 17464654 (-) True XLOC_006539
TCONS_00012659 mRNA downstream 222122 16922705 ~ 17464362 (-) False XLOC_006539
TCONS_00012657 mRNA downstream 1428636 16230556 ~ 16257848 (-) True XLOC_006535
TCONS_00012656 mRNA downstream 1460172 16219082 ~ 16226312 (-) True XLOC_006534
TCONS_00012655 mRNA downstream 1464096 16219082 ~ 16222388 (-) False XLOC_006534
TCONS_00012661 mRNA upstream 23632 17714296 ~ 17729474 (-) False XLOC_006542
TCONS_00012662 mRNA upstream 23782 17714446 ~ 17723417 (-) True XLOC_006542
TCONS_00012663 mRNA upstream 61202 17751866 ~ 17860435 (-) False XLOC_006543
TCONS_00012664 mRNA upstream 61932 17752596 ~ 17943135 (-) False XLOC_006543
TCONS_00012665 mRNA upstream 65691 17756355 ~ 18011168 (-) False XLOC_006543
TCONS_00012658 other downstream 1378601 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012624 other downstream 3301946 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 4015947 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 4041922 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012615 other downstream 4095914 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012667 other upstream 83993 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012681 other upstream 954226 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 958828 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 1024646 18715310 ~ 18715426 (-) True XLOC_006554
TCONS_00012693 other upstream 2526826 20217490 ~ 20222092 (-) False XLOC_006562

Expression Profile

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