RNA id: TCONS_00012670


Basic Information

Item Value
RNA id TCONS_00012670
length 1185
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_006544
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18019709 ~ 18069421 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAACATCACAATAGGCTGCCTCCTCTTCAGATTCTTGCATTCCCTCTTAATGGAGCCGCATAACATCGGAACAAAAGCAATTGTTTGTGGCTCGCCAAAATTAGGAAGCGTCTTTCCGTGAAGAAACGGAAAAGACATCCGCAAGCGTCTACAGCATCCGCGGGTAATTCGTCGGGCTGCCCGTGCCGCTTTGCTAAACTAGCTAGCAACTAAAACAGAATTAAAGCACCTTTTATTGTGAGTTCCTGTCAGATACCAGTTCTTGGGCTGCGGAGGCTCAGTCTCGTTTACCTTTAGAGATATCTCTCTGGCTTTCGGAGTTTAGTATTCATATTTTTACCTGGGACATCAGCCAGTTCGTGATCCATTTGTCCCTCCCTGCAGATCTGTCCTGATGCTGTCAAGGTCAAAGCTCAGTGCATGATGTGTTTCTGCTGTGACGGAGAAGACCTCCACCTTGGGCAGGGTTCATTGTTGTCTCTTCCTGATCCCTGTCCTCCGCAATAATGACTGACAAGAGGAACCCACCGTTTTTCAATGATGACAATGTAGGCGTGCTGCACTACAAGCTGCCCTTCAGCGAGACCATGGAGCTGTTCATTGAGACTCTGACAGGAACATGCTTCCAGCTGCGTGTCTCTCCATTTGAACAGGTCGTCTCCGTCAAGGCCAAGATTCAGAGATTGGAGGGCATCCCGGTGTCTCAGCAGCATTTGATTTGGAATGGTATGGAGCTTGAAGATGAGTACTGCTTACATGATTACAGCATCACAGAGGGCTGCACACTCAAGCTGGTGCTCGCCATGAGAGGAGGACCTGTAAACACTAGACGAGTGACAGTGACAGATGACTCTGTGCGGGATATCAGCGACTGCCTTGATGCCGGGAGAGAGGAGATGTGGGAAAAATCTCTGCCTAATAAACAGGTCACCTTCCTGGTGTACCGCGAGGGAGACCAGCTCAATTTCTTCCGCGTGGTGGATCGGGGCGATGGGACACTCACACCTGTGTCTGAATCATTGAGGTCAGTTCAAAGAAGAGAAATGACTCGCTAAGAGGAACAACTGCATGCGCACTACACTCTACTTCCCCTTTTTTAGATGCAAGCAGATGTTTCAGAGCTACTGTCTTCATGTGTCATGCTGTTTTAGCAATGAAGATATGCTTCAGCATGTACTGGTAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-090312-102 Predicted to enable zinc ion binding activity. Orthologous to human ZFAND4 (zinc finger AN1-type containing 4).

Ensembl:

ensembl_id ENSDART00000134477

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012668 lncRNA downstream 34750 17822517 ~ 18011208 (-) True XLOC_006543
TCONS_00013775 lncRNA downstream 288678 17751872 ~ 17757280 (-) False XLOC_006543
TCONS_00013472 lncRNA downstream 352139 17690661 ~ 17693819 (-) True XLOC_006541
TCONS_00013471 lncRNA downstream 355294 17686484 ~ 17690664 (-) False XLOC_006541
TCONS_00013774 lncRNA downstream 515422 17521005 ~ 17530536 (-) True XLOC_006540
TCONS_00012676 lncRNA upstream 98040 18167461 ~ 18174826 (-) True XLOC_006546
TCONS_00013474 lncRNA upstream 940751 19010172 ~ 19016833 (-) False XLOC_006556
TCONS_00013473 lncRNA upstream 940751 19010172 ~ 19016833 (-) True XLOC_006556
TCONS_00013475 lncRNA upstream 1206752 19276173 ~ 19277332 (-) True XLOC_006557
TCONS_00013476 lncRNA upstream 1269056 19338477 ~ 19339436 (-) True XLOC_006558
TCONS_00012665 mRNA downstream 34790 17756355 ~ 18011168 (-) False XLOC_006543
TCONS_00012664 mRNA downstream 102823 17752596 ~ 17943135 (-) False XLOC_006543
TCONS_00012663 mRNA downstream 185523 17751866 ~ 17860435 (-) False XLOC_006543
TCONS_00012666 mRNA downstream 185651 17766597 ~ 17860307 (-) False XLOC_006543
TCONS_00012661 mRNA downstream 316484 17714296 ~ 17729474 (-) False XLOC_006542
TCONS_00012671 mRNA upstream 3790 18073211 ~ 18119696 (-) False XLOC_006545
TCONS_00012672 mRNA upstream 4192 18073613 ~ 18105278 (-) False XLOC_006545
TCONS_00012673 mRNA upstream 7430 18076851 ~ 18088229 (-) False XLOC_006545
TCONS_00012674 mRNA upstream 38074 18107495 ~ 18122333 (-) True XLOC_006545
TCONS_00012675 mRNA upstream 58854 18128275 ~ 18174864 (-) False XLOC_006546
TCONS_00012667 other downstream 185611 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012658 other downstream 1738075 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012624 other downstream 3661420 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 4375421 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 4401396 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012681 other upstream 575469 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 580071 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 645889 18715310 ~ 18715426 (-) True XLOC_006554
TCONS_00012693 other upstream 2148069 20217490 ~ 20222092 (-) False XLOC_006562
TCONS_00012694 other upstream 2151120 20220541 ~ 20222134 (-) True XLOC_006562

Expression Profile

//