RNA id: TCONS_00012679


Basic Information

Item Value
RNA id TCONS_00012679
length 1467
RNA type mRNA
GC content 0.38
exon number 52
gene id XLOC_006549
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18521493 ~ 18548729 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaatactattaatttttaaatcaagCCTCTTAGTGATGGTGAGAGCTGGGAGGCTGACGGCCTGTCTCCCTCTGCTCATCAATaaacaatttgcatgttctcaccgtgttcgtacatgcgctacaggtgaattggtttttgcagttgtgcTCTTCAATacgcaatataaatacaatatctcaaaaaaaaaaatggttttccctgttggtattaatatggaccttttagtttcctccagatgctacGTTTTCActctcaagtccaaagacatgtggtacagTATTTTAAACATCCTAAATCTGATATTAATAGGTAGGCctactTCGCACTGTTGTCCCGTATCCCCAAACTCCAATGCCAGGGTAAAGAGGCTGTTGTGCATAAACGAGTATTCGGATTCAGAGCAGTACAAACTCCAAGACTTGTCATTCCTTCCGAAGCTGCCAGCATCAACAATGTGTTTATATAAAATGAGAATCTCACTATTTCTGAACTCTATAAAAGACATTTCCCTGTTAGTAACAGAGCCGAATAACATATCTGTGATAGAGTGGTGGCACACCCTAATGCTAGATGAGACATTCAGGAGATGGGAAAGGAGTCCAGTTCGACCGGCGCTGTCACATTGTCGCCCACACTGTGTCAAATGTGTGtactttAGAGAACTACATACAAACACTGGTTTTTGCTCAGTACCTGTAAGAAATGAATCACACTCTGTGATGAATGCTATCATagtggaaaaactaattctcattagatataagattgaggttagggttagggttaatgtaagcaACAGATTAGCATATATTTGCAATATTAATttcagtaatttactTTGCATTGAGCATGAGTGGTTGTCTACTGAGCATCTCAGCAGTTGCCCTGTCGCCGCCACCAgtttaataatcactaatagtcattataaaagtataatgtttatacaatatagAAGATTACAGGAACTTTTTAAACTTGATAATGTGCACCTTTTAGTtacattttgtaataattttgttcttttaAACACATGCAGTGTTTCTGCTCCAGCACCAGTGAAAATCGGCGGAGAGGAGGATACACTGCCAGCTGAAGAGGCCGAAGAATCGCTAGGGCACATTCTGCAAGATTGGGAATTCTGCTCTTTGAATCTTCCGCACTGTCCAGatgttttgtttttgaataatCCACAAAATAAAAACATCAAGTTTTGTCCTGAAAATTTTTCCAAGCTTGGAATGTGTGAAATAAATGAATTCAAGCATTCAGGGTTTCCAatttactttaacctgtttttcattgcagacaatatgaacacaaaatacttAATTCTGGACCATAAGAGAGTGGAAACAAGTACTGTGACAATGCAagaccacattctgcacacattgcaaagtcctggctgtgaaggaagaggaaacaggattacttattatttatttaacATGACATCTCTCGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000187686

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012676 lncRNA downstream 346667 18167461 ~ 18174826 (-) True XLOC_006546
TCONS_00012668 lncRNA downstream 510285 17822517 ~ 18011208 (-) True XLOC_006543
TCONS_00013775 lncRNA downstream 764213 17751872 ~ 17757280 (-) False XLOC_006543
TCONS_00013472 lncRNA downstream 827674 17690661 ~ 17693819 (-) True XLOC_006541
TCONS_00013471 lncRNA downstream 830829 17686484 ~ 17690664 (-) False XLOC_006541
TCONS_00013474 lncRNA upstream 461443 19010172 ~ 19016833 (-) False XLOC_006556
TCONS_00013473 lncRNA upstream 461443 19010172 ~ 19016833 (-) True XLOC_006556
TCONS_00013475 lncRNA upstream 727444 19276173 ~ 19277332 (-) True XLOC_006557
TCONS_00013476 lncRNA upstream 789748 19338477 ~ 19339436 (-) True XLOC_006558
TCONS_00013478 lncRNA upstream 802122 19350851 ~ 19357011 (-) False XLOC_006559
TCONS_00012678 mRNA downstream 175639 18332685 ~ 18345854 (-) True XLOC_006548
TCONS_00012677 mRNA downstream 325551 18179096 ~ 18195942 (-) True XLOC_006547
TCONS_00012675 mRNA downstream 346629 18128275 ~ 18174864 (-) False XLOC_006546
TCONS_00012674 mRNA downstream 399160 18107495 ~ 18122333 (-) True XLOC_006545
TCONS_00012672 mRNA downstream 416215 18073613 ~ 18105278 (-) False XLOC_006545
TCONS_00012680 mRNA upstream 80191 18628920 ~ 18637244 (-) True XLOC_006550
TCONS_00012683 mRNA upstream 128699 18677428 ~ 18691041 (-) False XLOC_006553
TCONS_00012684 mRNA upstream 129177 18677906 ~ 18695289 (-) True XLOC_006553
TCONS_00012686 mRNA upstream 252365 18801094 ~ 18835278 (-) False XLOC_006555
TCONS_00012687 mRNA upstream 252365 18801094 ~ 18863680 (-) False XLOC_006555
TCONS_00012667 other downstream 661146 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012658 other downstream 2213610 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012624 other downstream 4136955 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012619 other downstream 4850956 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012616 other downstream 4876931 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012681 other upstream 96161 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012682 other upstream 100763 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012685 other upstream 166581 18715310 ~ 18715426 (-) True XLOC_006554
TCONS_00012693 other upstream 1668761 20217490 ~ 20222092 (-) False XLOC_006562
TCONS_00012694 other upstream 1671812 20220541 ~ 20222134 (-) True XLOC_006562