RNA id: TCONS_00012683


Basic Information

Item Value
RNA id TCONS_00012683
length 1576
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_006553
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18677428 ~ 18695289 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCAGACCGGAAGTACAGGCAGTTTTTCTGTCATCGCGCAGAGGGAAGCAGTCAGCGCCTAGTGAGGTCATCTGCTTCAAGGTGCACCTGAACATCGCCTGTGGTGTTAAAACGAGAAGTCAGATAGGATGTCTGGAGATTTGCCCTTGAATATCAACATTAAGGAACCACGATGGGACCAGGGCACATTTATGGGCCGGGCTCAGCACTTCTTCATGGTGACGGACCCCAGAAACGTGCTGCTATCCAGTGAGGTTTTAGAGGATGCCAGAGTTACTGTGGAGAACTACAGGTTAGGGGTTGTGAAGCCTGGGCTAACAGAAGATGCACTGTGGAGGGCCAAATACATCTACGACTCCGCTTTCCACCCAGACACAGGAGAGAAAATGTTGCTAGTTGGACGCATGTCTGCACAAGTGCCCATGAACATGACTATTACAGGCTGCATGCTTACCTTTTACAGGACCACCCCAGCAGTGGTGTTTTGGCAGTGGGTTAACCAGTCCTTCAATGCTGTTGTCAACTACACTAACCGCAGTGGAGATGCACCGATCACTGTCAATCAGCTTGGAGCAGCATATGTCAGTGCCACCACCGGAGCAGTAGTAACAGCACTTAGCCTGAAGGCTCTCACCAAGCACTTGCCAGCTATTATCAGCCGTTTTGTTCCATTTGCTGCAGTGGCAGCAGCAAACTGTATTAACATCCCCTTCATGAGACAAAGAGAGCTGAAGTGTGGAATTCCTGTTACTGATGCTGAGGGAAAACGTCTCGGAGAATCAACTAATGCTGCTCAGCAAGCCATCGTACAGGTGGTGGTGTCTCGAATTGGCATGGCAGTGCCAGCCATGGcTATTCCCCCCGTTATCATGAATGCCTTAGAGAAGAAAGCCTTCCTGAAACGGTTCCCAGTTCTGAATGCCCCTTTACAAGTTGGACTTGTTGGATTCTGTCTGGTGTTTGCCACTCCGCTGTGCTGTGCTCTGTTCCCACAGAAGAGTTCTATGAAGGTGAGCAGTCTGGAGCCGGAGCTTCAAGAGAGCATACGACAAAGCAATCCTCACATCAGCACTGTTTTTTTCAACAAGGGTCTGTAGAAAGCTCTAGGCTGAAGCCCATGCTGATGTCCTCCATTGCACTGGAGATTAGTGGGCACGACTTGAAGGATagaacatatttatttttgtttttctgctccgAGTTTTGTCAGTTTTACCCATGTTATCGTACCATCCTAAAGGGTTATATGTACAGTGAAGGCTAGAACCTGCTGCTGAATTTAGTTAAAGATGCTTGAATGTTATCTGCTGCATTGATGCTTCTCACCCTAATCTTGTGTTAACAGCACTCGCATATAGACTCATTTATCAGTATATTCATTACTTTGATTCAGTTTAGACTATCATATGTATATTGTTTTATCCATTAGATTCACTAGTGTTGTTTAGAACTTTCCAGATTGTTTCCAACTCTACTCCTACAGTGAATACAGTTACAGAAATCAGGTGTATTCTGACATGAGTGTTTCCACCTTTCGTGCTCCATTATGTGCCTATTAAAAGGGTAGATCATCCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:1990542 mitochondrial transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0022889 serine transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2092 Predicted to enable serine transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in female organism. Orthologous to human SFXN3 (sideroflexin 3).

Ensembl:

ensembl_id ENSDART00000057867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012676 lncRNA downstream 502602 18167461 ~ 18174826 (-) True XLOC_006546
TCONS_00012668 lncRNA downstream 666220 17822517 ~ 18011208 (-) True XLOC_006543
TCONS_00013775 lncRNA downstream 920148 17751872 ~ 17757280 (-) False XLOC_006543
TCONS_00013472 lncRNA downstream 983609 17690661 ~ 17693819 (-) True XLOC_006541
TCONS_00013471 lncRNA downstream 986764 17686484 ~ 17690664 (-) False XLOC_006541
TCONS_00013474 lncRNA upstream 319131 19010172 ~ 19016833 (-) False XLOC_006556
TCONS_00013473 lncRNA upstream 319131 19010172 ~ 19016833 (-) True XLOC_006556
TCONS_00013475 lncRNA upstream 585132 19276173 ~ 19277332 (-) True XLOC_006557
TCONS_00013476 lncRNA upstream 647436 19338477 ~ 19339436 (-) True XLOC_006558
TCONS_00013478 lncRNA upstream 659810 19350851 ~ 19357011 (-) False XLOC_006559
TCONS_00012680 mRNA downstream 40184 18628920 ~ 18637244 (-) True XLOC_006550
TCONS_00012679 mRNA downstream 128699 18521493 ~ 18548729 (-) True XLOC_006549
TCONS_00012678 mRNA downstream 331574 18332685 ~ 18345854 (-) True XLOC_006548
TCONS_00012677 mRNA downstream 481486 18179096 ~ 18195942 (-) True XLOC_006547
TCONS_00012675 mRNA downstream 502564 18128275 ~ 18174864 (-) False XLOC_006546
TCONS_00012686 mRNA upstream 110053 18801094 ~ 18835278 (-) False XLOC_006555
TCONS_00012687 mRNA upstream 110053 18801094 ~ 18863680 (-) False XLOC_006555
TCONS_00012688 mRNA upstream 112673 18803714 ~ 18835254 (-) True XLOC_006555
TCONS_00012689 mRNA upstream 919521 19610562 ~ 19642288 (-) False XLOC_006560
TCONS_00012690 mRNA upstream 935949 19626990 ~ 19642239 (-) True XLOC_006560
TCONS_00012682 other downstream 27746 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012681 other downstream 32423 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012667 other downstream 817081 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012658 other downstream 2369545 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012624 other downstream 4292890 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012685 other upstream 24269 18715310 ~ 18715426 (-) True XLOC_006554
TCONS_00012693 other upstream 1526449 20217490 ~ 20222092 (-) False XLOC_006562
TCONS_00012694 other upstream 1529500 20220541 ~ 20222134 (-) True XLOC_006562
TCONS_00012695 other upstream 1536004 20227045 ~ 20231708 (-) False XLOC_006563
TCONS_00012696 other upstream 1539098 20230139 ~ 20231750 (-) True XLOC_006563

Expression Profile

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