RNA id: TCONS_00012688


Basic Information

Item Value
RNA id TCONS_00012688
length 561
RNA type mRNA
GC content 0.55
exon number 2
gene id XLOC_006555
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18801094 ~ 18863680 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACGGAGAATGAGCATGTAGGAGAGAAGCAAAGTGATACAGAGAGGAGAAGCAGCAGAAGTACAGTGAACTGACTGGGATTGTACCTCCAGGACAGGCTGGGGAGACGCGAGGAGGCAGCCATGCAGAGCACTATGGAGTGTGTGTCCTGGTCGGGTGTTCACCATGGCTCTAGTTCAGGCACTGCCTGTACCCACTGATCACCCAAAGCCCAGTACTGACGTCCAGCAGTGCTGCTCAGTGTCTCACTCCCCCACAGTAGATGTCACTGGCACCATGGGTTCTGTCAGCAGCCTCATCTCTGGACGTACCTACCAGGAACGCCACTGTCGAGCCGCCAGTGACTTTGGTGCCAGATATCGCAAACCCACACCAGCTACAAGCTGTTTTCGACAACAAGAGGGCACACTGCGCAGCTCCAGCTCACAGGAGCAGCTTCTGAACAGTCAGCCTCCTCTACCCGCTAAGAACAAGTCTTCTGCCCTCATCTCGGCTGGCAATGGCAACTATGGCTATTTGAGTGATGAGCCAGTGGGTGATTGGAATGATAATCACGTGAGC

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0051168 nuclear export biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0051255 spindle midzone assembly biological_process
GO:0007049 cell cycle biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0051013 microtubule severing biological_process
GO:0051301 cell division biological_process
GO:0060026 convergent extension biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0030496 midbody cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-276 Enables beta-catenin binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; convergent extension; and regulation of signal transduction. Predicted to be located in cytoplasm; microtubule cytoskeleton; and midbody. Is expressed in several structures, including digestive system; nervous system; otic vesicle; pectoral fin bud; and tail bud. Orthologous to human LZTS2 (leucine zipper tumor suppressor 2).

Ensembl:

ensembl_id ENSDART00000147579

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012676 lncRNA downstream 628888 18167461 ~ 18174826 (-) True XLOC_006546
TCONS_00012668 lncRNA downstream 792506 17822517 ~ 18011208 (-) True XLOC_006543
TCONS_00013775 lncRNA downstream 1046434 17751872 ~ 17757280 (-) False XLOC_006543
TCONS_00013472 lncRNA downstream 1109895 17690661 ~ 17693819 (-) True XLOC_006541
TCONS_00013471 lncRNA downstream 1113050 17686484 ~ 17690664 (-) False XLOC_006541
TCONS_00013474 lncRNA upstream 174918 19010172 ~ 19016833 (-) False XLOC_006556
TCONS_00013473 lncRNA upstream 174918 19010172 ~ 19016833 (-) True XLOC_006556
TCONS_00013475 lncRNA upstream 440919 19276173 ~ 19277332 (-) True XLOC_006557
TCONS_00013476 lncRNA upstream 503223 19338477 ~ 19339436 (-) True XLOC_006558
TCONS_00013478 lncRNA upstream 515597 19350851 ~ 19357011 (-) False XLOC_006559
TCONS_00012684 mRNA downstream 108425 18677906 ~ 18695289 (-) True XLOC_006553
TCONS_00012683 mRNA downstream 112673 18677428 ~ 18691041 (-) False XLOC_006553
TCONS_00012680 mRNA downstream 166470 18628920 ~ 18637244 (-) True XLOC_006550
TCONS_00012679 mRNA downstream 254985 18521493 ~ 18548729 (-) True XLOC_006549
TCONS_00012678 mRNA downstream 457860 18332685 ~ 18345854 (-) True XLOC_006548
TCONS_00012689 mRNA upstream 775308 19610562 ~ 19642288 (-) False XLOC_006560
TCONS_00012690 mRNA upstream 791736 19626990 ~ 19642239 (-) True XLOC_006560
TCONS_00012691 mRNA upstream 931642 19766896 ~ 19799824 (-) False XLOC_006561
TCONS_00012697 mRNA upstream 1544138 20379392 ~ 20381485 (-) True XLOC_006564
TCONS_00012698 mRNA upstream 1557402 20392656 ~ 20518632 (-) False XLOC_006565
TCONS_00012685 other downstream 88288 18715310 ~ 18715426 (-) True XLOC_006554
TCONS_00012682 other downstream 154032 18649492 ~ 18649682 (-) True XLOC_006552
TCONS_00012681 other downstream 158709 18644890 ~ 18645005 (-) True XLOC_006551
TCONS_00012667 other downstream 943367 17774657 ~ 17860347 (-) False XLOC_006543
TCONS_00012658 other downstream 2495831 16307767 ~ 16307883 (-) True XLOC_006537
TCONS_00012693 other upstream 1382236 20217490 ~ 20222092 (-) False XLOC_006562
TCONS_00012694 other upstream 1385287 20220541 ~ 20222134 (-) True XLOC_006562
TCONS_00012695 other upstream 1391791 20227045 ~ 20231708 (-) False XLOC_006563
TCONS_00012696 other upstream 1394885 20230139 ~ 20231750 (-) True XLOC_006563
TCONS_00012701 other upstream 1700396 20535650 ~ 20540701 (-) False XLOC_006566

Expression Profile

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